Thunnus thynnus (Atlantic bluefin tuna): 137195627
Help
Entry
137195627 CDS
T11154
Symbol
ltn1
Name
(RefSeq) E3 ubiquitin-protein ligase listerin
KO
K22377
E3 ubiquitin-protein ligase listerin [EC:
2.3.2.27
]
Organism
tty Thunnus thynnus (Atlantic bluefin tuna)
Brite
KEGG Orthology (KO) [BR:
tty00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
tty03009
]
137195627 (ltn1)
04121 Ubiquitin system [BR:
tty04121
]
137195627 (ltn1)
Enzymes [BR:
tty01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
137195627 (ltn1)
Ribosome biogenesis [BR:
tty03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
137195627 (ltn1)
Ubiquitin system [BR:
tty04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
137195627 (ltn1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ltn1_1st
LTN1_E3_ligase_6th
UBC_like
LTN1_E3_ligase_5th
zf-RING_2
HEAT_GCN1
zf-ANAPC11
FANCL_C
zf-rbx1
RINGv
zf-RING-like
zf-C3HC4_2
C1_1
Motif
Other DBs
NCBI-GeneID:
137195627
NCBI-ProteinID:
XP_067464243
LinkDB
All DBs
Position
13:13679172..13694977
Genome browser
AA seq
1770 aa
AA seq
DB search
MGGKNKQRTKGNVRPSSSGRAAEVLAREGGVIPGFVGFDSTVTSELSYVPAVHGAEEIDN
LVDADFRLVLRKLSKRDGVTRLKAVQDFGSMCQERDAEDVKGVLPYWPRIYCKISVDYDR
RIREATQQAFEQLVLKVRRSLAPFLKSLMGHWILSQCDTYTPAASAACQAFQAAFSPAKQ
PEALSFCKDEILNVLQDVLLKETADTLSDPQSVTEEEREAKYVRMLTSSLLGVKRLLSLL
PQDDRVALEQRLSHLVTSGKFWKYSKHKTPQVRGAFFEMVCALCELTPGLVQAEAARFCP
AVLLSIDDTDPVVLPPVWEAVLHVVSTIPDCWTHVNAKKGVLPKLWALLREGGKGMAKAL
HPNLMPLLSKLPQQVTDPTLDFYTTFFTSLIHGLSSERAATSPSESAVIVTSAVECLRYC
ILHNTEEEDDQRRIRNMLISQQLLPLLERALENPSLQNSPLFLLVTELLVSWEKRAGVHS
GSEANESKDVFQGLLADFWEGLGLLFVRYADNEEADPQALEGVATLLQVMRYPERVNRKQ
VQKKKSVKICLSKTELNEGTGVEGDGVEKPVQTVSDLVNEKAFGSPQTQHFEDVVCQLAQ
LCLVHVNEKNSERHLVFLSLLLRSFHTPRVFSKLVELDDKITTDGEQRDEVNLNNPAMQF
LLERVVVWLAEKGRSDTEHLVEMVFSSLYCCSQQETTRILNHITTMNLQWGIILQIIQRA
CADPETLKSCRDWLKGSVLGEQLLGLTKELCKMGRNSSSSSSSASSPSWTLISLVLSQHH
NNEPLIGEVYMEKILEKLHATLSETKSLSDAGNMEPLVSFICDVASTFFSSVQDCLLLQS
AEELLLTVFQLTAQDQTHTHLSDSLLEKLKKACVAGVQSLVQHSEYEANEGGFLHRAALW
VTNQLLTVSLDIKSLQVLVLAVQSIVETIISVCDQDSHLLVQFFTYLTPSQTGWTRIRQA
LPPQWVKTPLLASRHRGVCEKPSMDIWKCKVSNRLPAHLCACALLGRVIRTAAFIPCDQK
KAKCPSHLPNIKYTVAELLYALQWCKEVEYSPTIVSAYHSLLTDWGLSEGLHGQVPITDL
LETLYSRSVELGGLWSLTLEDYIDTNNLEATHSASLRKLYGSADSLFPVSQSKLSTLQVL
CPTMTKEDRETLVALATSGIINWQENDNVYGCLAVLLCCLQADTQVEEEVLQAILATVME
WRNSKEDWFLFSSDLSQAVTEQLNLTVEMMRFLSWLVTHCPTVLGGSQWDFLLCSMLAWL
ETASENVSSLWNPWVQLFVCENTILIVELNEFFSSSSPDVMEKLPSELAGEWRDFFVEGI
YNLLLPLPISITDAFTEPDDPVFPLAALQSVSVALTYVPTQQLNQNSLPARFIADQKTNL
PEPLQTLLNTFCPLLLFKARPLQITVYYMLEKVMPQLPACDGEGDSNKPDDDRDEPCLSP
PASLMAILSTCEELCDSILAGLQVGEFAVVQPLSVEYSCILGYLLAWKLLLIFFKSSPSH
LRAHYAQYLKRSCSLNKLLLHLFKLMPENPVYPGQGSDSKETKTFFTESPSLAVEESESV
EWELPHLACSVYYSTVQDLPAMVRLWWNSQEKRVSAAVEKFTIKYVSPVLSAQEISSVQS
STQMFDSMTVKARSAAREVIATYSVDDIFIELVIQLPQNYPLGSITVESGRRVGVAVQQW
RNWMLQLSTYLTHQNGSIMEGLALWKNNVDKRFEGIEDCMICFSVIHGSNYSLPKKACRT
CKKKFHSACLYKWFTSSNKSTCPLCRETFF
NT seq
5313 nt
NT seq
+upstream
nt +downstream
nt
atggggggtaagaataaacagcgaactaaaggaaatgttcggccatccagtagcggccgg
gctgctgaggtgttggctcgggaaggtggtgttatcccgggctttgtgggctttgactcc
acggttacttcagagttgagttatgtcccagctgtccacggcgcggaggagatagacaac
ctggttgatgctgatttccgcctagtgctcaggaaactctccaaaagagatggagtcacc
agactgaaagctgtgcaggactttgggtccatgtgtcaggaacgggatgctgaagatgtt
aaaggggtcctgccatactggccgaggatttactgcaagatatcagtggactatgatcgc
cgcatcagggaggccacccagcaggcctttgagcagctggtgctgaaagtacgtcgcagc
ttggccccatttctgaagagcttgatgggccactggattctgtcccagtgtgacacctac
acacctgcagcttctgctgcatgccaggccttccaggctgccttctcaccagccaaacag
cccgaggcgctcagcttttgcaaagatgagatcctgaatgttcttcaagatgttttgtta
aaggaaactgcagacacactgagcgatccacaaagtgtgacagaagaagagagagaagcc
aaatatgtgcgcatgctgaccagctctctgctgggggtaaagagactgctttccctgctg
ccccaggatgacagggtggccctggagcaaagactatctcatcttgttacctctgggaag
ttctggaaatacagcaaacacaagacaccacaggtgcgaggagcatttttcgagatggta
tgcgctctgtgtgagttaactccaggacttgtccaggctgaagcagcacgattctgccct
gcggttctcctcagcattgatgacacagatcctgtagtgctgcctcctgtgtgggaagct
gttcttcatgttgtgtctacaatccctgactgctggacacatgtgaatgctaagaagggc
gtattacctaaactttgggctctattaagagagggtggcaaaggcatggctaaagcactt
caccccaatttaatgccgctcctcagcaaactgccccagcaggtcacggacccaaccttg
gacttctacaccactttcttcacttctctcatacacggtctgtccagtgagcgtgcagca
acaagcccatcagagagtgcagttatagtgacttctgctgttgagtgcttgaggtactgc
atactgcacaatacggaagaggaagatgatcagagaagaatacggaacatgcttatttca
cagcagctcttaccactactagaaagagctcttgaaaatccctcccttcagaatagccct
cttttccttttggtcactgaactgctcgtttcatgggagaagagggcaggtgtacatagt
gggagcgaagctaatgagagcaaagatgtctttcaaggactcctggcagacttctgggag
ggtcttggtcttctttttgtgcgttacgcagacaacgaggaagcagatccacaggctttg
gaaggagtagccaccttgctgcaggtgatgcgttaccctgagagagtaaacagaaaacaa
gtccagaagaagaaatctgtcaagatctgtttgtctaagacagaattaaatgaaggaact
ggagtcgagggtgatggtgtggagaagccagttcagacggtgtcggaccttgtgaatgag
aaagcattcggatccccacagacccagcattttgaggatgtagtgtgccagctggcacaa
ctgtgcctggtgcatgtgaatgagaaaaactcagagagacatcttgttttcctctctcta
ctcctgcggtcttttcacacacccagggtcttcagtaaattggtggaattggatgataaa
ataacaacggacggtgagcagagggacgaggtgaatttgaacaatccagcgatgcagttc
ctgctggaacgagtggtggtgtggctggctgagaaggggcgcagtgacacagagcacctg
gtggagatggttttcagctctctctactgctgcagccagcaagagaccacccgcatcctc
aaccacatcaccacgatgaatctacagtggggaattatcctgcaaatcatacagagggca
tgtgcagatccagagactcttaagagctgtagggattggctgaaaggttcagttctgggc
gagcaactcttaggactgactaaggagctctgcaagatgggacgcaattcttccagttct
tcctcttctgcaagcagccccagttggactcttatcagcctagtcctctctcagcaccac
aacaatgaacctctgataggtgaggtgtacatggagaagatcttggagaagctccacgcc
actctgtctgagactaagagtctgtcagatgcaggcaatatggagccactcgtctccttt
atctgtgatgtggcctccacattcttctcttctgtacaagactgtcttctactacagtct
gctgaggaacttttgctcactgttttccagctcacagcccaagatcaaacacacactcac
ctttctgattcacttttagagaagctgaagaaagcatgtgtagccggggtccagtcattg
gtccaacactctgaatatgaggccaatgaaggtggtttcctgcacagagcagctctttgg
gtgacgaaccaactactcactgtctctctggacattaaaagtctacaggttctggttctg
gctgtacagagcatagtagagacaatcatctctgtttgcgatcaagactcccacctcctt
gtccagttctttacctatttgacacccagccagacaggatggacaagaataagacaggcc
ttacctccccagtgggtcaagacccctttactggccagccgtcatcgaggagtttgtgaa
aaaccctccatggatatctggaagtgtaaggtgtcaaacagattaccagcccacctatgt
gcctgtgccctattagggagggtgatccggactgctgcattcataccttgtgaccaaaag
aaggcaaagtgtccttcacacctgccaaacattaagtacacagttgcagaattgctgtat
gctctgcagtggtgtaaggaggtagagtacagccctactatagtgtctgcctatcacagc
ctgctgactgactgggggttgtcagaaggactgcacggccaggttccaataacagacctg
ctggagacactctactcaaggtcagtagagcttggaggtctttggtccctgactttagaa
gactacattgacaccaacaacttggaagccactcacagtgcaagcttgaggaagctctac
ggcagtgcagatagtttgttcccagtgtctcaaagcaaactgagcacactccaggtactc
tgccccaccatgaccaaagaagacagagagactctcgtagctctggctacttctggaata
atcaactggcaagagaatgacaatgtgtatgggtgtctggcggtgctgctgtgctgtcta
caagccgatacacaagtagaagaggaggttttgcaggctatcctggccactgtgatggag
tggaggaacagcaaggaggactggttcctctttagcagtgacctgtctcaagcagttaca
gaacagttgaatcttactgtggagatgatgcgtttcctgtcatggctggtgactcattgt
ccaacggttctcgggggcagccagtgggacttcttgctctgctctatgttagcctggttg
gagactgccagtgagaatgtgagcagtctgtggaacccatgggtgcagctgttcgtgtgt
gagaacactatactaatagtggagctgaatgagttcttctcatcatcctcacccgatgta
atggagaagctgccgtcagaactggcgggtgaatggagagacttcttcgtagaaggaatc
tacaatctgctgttgcctctgcctatcagtatcaccgatgccttcactgaaccggacgac
cctgtgtttcctctggcggcactgcagtcagtcagtgtggctctgacttatgtgcctacg
cagcagctgaaccaaaactccctgccagcacgattcatagcagaccagaagacaaacctg
ccagagccccttcagacactcctcaacaccttctgccctctgctattgtttaaggccagg
cccctgcaaatcactgtctactacatgttagaaaaagtcatgcctcagctgcccgcatgt
gatggagaaggagacagcaacaagcctgatgatgatagagatgagccgtgtctctctcca
ccagcctctctgatggccatcctatcaacctgtgaggagctgtgtgatagcatcctggcg
gggcttcaagtaggagagtttgcagtggtccagcctctcagtgtagaatactcctgcatc
ctggggtatttgctggcctggaagctactactcatctttttcaaatcctcaccctcccat
ctgcgtgcccattatgcccagtatcttaagagaagctgctcccttaacaagctcctcctt
catcttttcaaactgatgcctgagaaccccgtctacccaggccaggggtcagactcaaag
gagaccaaaaccttctttacagagagcccgtctctggctgttgaagaaagtgagagtgtt
gagtgggagctccctcacctggcatgcagtgtgtactacagcacagtgcaggacctgcct
gctatggtgcggctgtggtggaatagccaggagaagagagtgagcgcagctgtggagaag
ttcaccattaaatatgtcagccctgttctgtcagcccaagagatctcatctgtccagtcc
agcactcagatgtttgacagcatgactgtgaaggcccgctcagcagcgcgggaggtgatt
gctacctattctgtggatgatatcttcatcgagttggtgattcagctgccacagaattac
cctctaggctctatcactgtagagagtgggaggcgtgtgggtgttgctgtacagcagtgg
aggaactggatgctgcaactgagcacctacctcacacatcagaatggcagtataatggag
ggcctggctctgtggaagaacaacgtggataagcgtttcgagggaatagaggattgtatg
atctgcttctctgttatccatggctccaactattccctgcccaagaaggcttgtcgcacc
tgcaaaaagaaattccactcagcatgtctgtacaaatggtttacttccagcaataagtcc
acctgtccactgtgcagagaaacctttttctaa
DBGET
integrated database retrieval system
