Thunnus thynnus (Atlantic bluefin tuna): 137195823
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Entry
137195823 CDS
T11154
Symbol
rad50
Name
(RefSeq) DNA repair protein RAD50
KO
K10866
DNA repair protein RAD50 [EC:3.6.-.-]
Organism
tty Thunnus thynnus (Atlantic bluefin tuna)
Pathway
tty03440
Homologous recombination
tty03450
Non-homologous end-joining
tty04218
Cellular senescence
Brite
KEGG Orthology (KO) [BR:
tty00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
137195823 (rad50)
03450 Non-homologous end-joining
137195823 (rad50)
09140 Cellular Processes
09143 Cell growth and death
04218 Cellular senescence
137195823 (rad50)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tty03032
]
137195823 (rad50)
03400 DNA repair and recombination proteins [BR:
tty03400
]
137195823 (rad50)
DNA replication proteins [BR:
tty03032
]
Eukaryotic type
DNA Replication Termination Factors
MRN complex
137195823 (rad50)
DNA repair and recombination proteins [BR:
tty03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
MRN(MRX) complex
137195823 (rad50)
BRCA1-C complex
137195823 (rad50)
NHEJ (non-homologous end-joining)
MRX complex
137195823 (rad50)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
Rad50_zn_hook
AAA_21
SbcC_Walker_B
SMC_N
AAA_15
ABC_tran
Mu_Gam-Sipho_Gp157-TOTE
zf-met
AAA_29
AAA_16
AAA_13
AAA_22
Motif
Other DBs
NCBI-GeneID:
137195823
NCBI-ProteinID:
XP_067464567
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Position
13:18135857..18167870
Genome browser
AA seq
1313 aa
AA seq
DB search
MSKIDKMSILGVRSFGVEDKDKQVISFFTPLTVLVGPNGAGKTTIIECLKYATSGELPPG
SKGGAFVHDPKDAHETDVRAQIRLLFTDVKGEKVTIQRSMSCTQKAKNYSFKSLEQVITR
LKDGEKERSLSSKCGELDREMISALGVSKPVLNNVIFCHQEESNWPLCEGKALKEKFDSI
FAATKYIKALDTMRQLRLKQGQTVKECQVELRYLKQNKEKAQQIRDTVATKEAQLMASKD
NVQQIENQIDPLENRLTDIDFKLGKVMKLDNDIKALDSRKKQMEEDNKELEETMEQVFQG
SDEQLQETYQNHQKTVREKERRLTDCQKEQERAGRECQRLNRVKADLLVEQGRLQLEADR
HTQNIKNRDTQVRSLSSYLEMEGYDRPPFTTLQLESFNRHVTQRLEQEKETVSQVMADLQ
EKEQQKQQSIDEMRDKKTGLERTVELKRDLQGKKQQELRNVRTELQRLEGSSSRLQELEN
ELAKAERELQSAVQSSNVEELKVEVGELQREKAELDRTQRQLDQEMAMLNTHTSARTQMD
MLKKDKMEKEEQVRKIKSRHSEDLVSLLGHFPNKRELEDWIYTKSKEVNSTRDRLTKLNK
DLASSEQNKSHIASELRKKEQQLTSDEEKFFNVCGSQDLEQDLGKLQEDLEKISKQRAML
AGATAVYTQFISQLTEEREPCCPVCQRMFPSESDLQEVISDMQSKLRLVPDKLKNTEQDL
KRKERRRDEMMTLRPVRQSIVQYQEKELPELRNRLQSVNREIERLKSDVEEQEARLGTLM
SEEETAKACLQDITLMDKHLMDLKEVERKIAQQAAKLQGVDLTRTIQQVSQEKQETQHKL
DTTSSKMELKRKLIQDQQDQIQILKSAVNETRAEKLQLSSDMQKQQQLEEQCVEFTTEIQ
TLTRDIRDAKEQLSPLSAALEKLQQEKQELVERKRQKQEEGQEKIGSIKERVKAIATLER
DITKYVDEGKDEYKEQKESELQETNTQLHEAEKHKEKINKEMGNIRQDIDTQKVQERWLQ
DNLTLRKRVEELKEVVVKHEALMKDMGNMQVLQLRQERREAERKLEDLKKNRSIALGRQK
GFEEEIMHYRKELREDQYEKADERYKNKMITMRTTELVIKDLDLYYKALDQTIMKFHSMK
MDEINKIIRDLWRSTYRGQDIEYVEIRSDVDENSSAGVRRRVYNYRVVMVKGDTALDMRG
RCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDRENIESLAHALVEIIKSRSRQ
RNFQLLIITHDEDFVELLGRSSYIEHFYRIRKNQDQNSEITKCSITSLSSYLH
NT seq
3942 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaaaatagacaagatgagcatcttaggggtgaggagctttggggtcgaggacaaa
gacaaacaagtcatctctttttttactcctctgactgtgctggttggacccaatggagcg
gggaaaacgactataattgagtgccttaagtatgcgacatcaggagagcttccccctgga
tctaaaggaggtgcatttgttcatgatccaaaggatgcccatgagacggacgtgcgagca
cagattcgactcttattcaccgacgtcaaaggagagaaagtgaccatccagcgctccatg
tcctgcactcagaaggcaaagaactactccttcaaaagtttagagcaggtcatcaccaga
ttaaaagacggtgagaaggaaagaagcttgtcgtccaagtgtggtgaactggaccgggag
atgatttctgcactgggtgtgtcaaaacctgtgctgaataatgtcatcttctgtcaccaa
gaagagtctaactggccgctttgcgagggtaaagcactcaaagagaagtttgactccatc
ttcgctgcaaccaagtatatcaaagctttggacacgatgcgacagctgcgtctcaaacag
ggccagacagtcaaagagtgtcaggtggagctgcgctacttgaagcagaacaaggagaaa
gcccagcagattagagacaccgtggccacaaaggaggctcagctgatggcctctaaagac
aacgtccagcagatagagaaccagattgatccacttgagaatcgactgacagatattgac
tttaaactggggaaggtgatgaagctggacaacgacatcaaagctttagacagcaggaag
aaacagatggaggaggacaacaaggagctggaggaaaccatggaacaggtgttccagggc
tcagacgagcagctgcaggagacgtaccagaaccaccagaagacggtgagggagaaggag
cggaggctgacagactgccagaaggagcaagagagagctggccgggaatgtcagagactc
aacagagtcaaggctgatctcctggtagagcaaggtcgtctacagctggaagctgaccgc
cacactcaaaacatcaaaaaccgcgacactcaggttcgctctttgtcatcctacctggaa
atggagggctatgaccgaccgcccttcacaactcttcagcttgagagcttcaatcgtcat
gtcacacagagactggagcaggaaaaagagacagtcagtcaggttatggcggacctgcag
gaaaaggagcagcagaagcagcagtccattgatgaaatgagagataagaagactggcctg
gagagaacagtggagctgaagagagacctgcagggaaagaaacagcaagaactgaggaac
gtcaggacagagctgcagaggctggagggttcgtctagccgactgcaggagctggaaaat
gaattggcaaaagcagagcgtgagctgcagagcgcagtgcagagctccaatgtggaggag
ctaaaagtcgaggttggggaactccagagagaaaaggctgaacttgaccgcacacagaga
cagctcgaccaagagatggcgatgcttaacacacacacatctgcacgcacacagatggac
atgttgaaaaaggacaagatggagaaggaggagcaggtacgtaagatcaagtctcgccac
agcgaggatctagtgtcattgcttggccactttcccaacaaaagagagctggaggactgg
atctataccaagtcgaaggaagtcaacagtaccagggacagactcaccaaactcaataag
gacctggcatcaagtgagcagaataaaagccacattgcttctgagctgcgtaagaaggag
cagcagttaaccagtgacgaagaaaagttcttcaatgtgtgtggcagtcaggatctggag
caggacctgggcaaactgcaggaagatctggagaagatatccaaacaaagagccatgcta
gctggagccacagcagtgtatacccagttcatcagccagctgacagaggagagggagccc
tgctgccctgtgtgccagcggatgttcccgtcagagtctgacctgcaggaagtaatcagt
gacatgcagtccaaactacgcctggtgccagacaaactgaaaaacactgagcaggaccta
aagaggaaggagaggaggagggatgagatgatgactcttagacctgtcaggcagtccatt
gtacagtatcaggaaaaagagttgcctgagttgagaaaccgcctgcagagtgtgaacaga
gaaattgagaggcttaagagcgatgtggaagagcaggaggctcggctgggtaccctgatg
tcagaggaggaaacagccaaggcttgcctgcaggacataactctcatggacaaacacttg
atggaccttaaagaggtggagaggaaaatagctcagcaagcagctaaactccagggagta
gacctgaccagaaccatccagcaagtcagtcaggagaaacaggagactcaacacaagcta
gacaccacttccagcaagatggagttgaaacgtaaactgatccaggaccagcaggatcag
attcagatactgaaaagtgctgtgaatgagacgagagcagagaaactccagctgagcagt
gatatgcagaaacagcagcagctggaggagcagtgtgttgaattcaccactgagatacag
accttaaccagggacatcagggacgcgaaggaacagctgtcccctttgtctgccgctctg
gagaagctgcagcaggagaagcaggagctggtggagcgcaaaaggcagaagcaggaagaa
gggcaagaaaagatcggttccattaaagagagagtaaaggcaatcgccaccttggaaaga
gacatcaccaaatacgtggatgagggcaaagatgaatacaaagagcaaaaagagtctgag
cttcaagaaaccaacacccagctccatgaggctgagaaacataaagagaagatcaacaag
gagatgggaaacatccgtcaggacatagacactcaaaaagtccaggagcgctggttgcag
gacaacctgaccttgaggaagcgtgttgaggagttaaaggaggtggtggtgaaacacgag
gctcttatgaaagacatgggcaatatgcaagtcttgcagctacgccaagagcgacgtgag
gcagaacgcaaactggaagacttgaagaagaaccgcagcattgcattgggtcgtcagaaa
ggctttgaggaggagataatgcattacaggaaagagctgcgagaagaccagtatgaaaaa
gctgatgagcgatacaaaaacaagatgatcacaatgaggacaacagagctggtcattaaa
gacctggatctctactataaggcccttgatcaaaccatcatgaaattccacagcatgaag
atggatgagatcaacaagattatcagagacctgtggcgcagcacctacaggggtcaagac
atcgaatacgtggagatcaggtctgacgtagatgagaactcgtccgctggagtgaggcga
agagtgtacaactacagagtagttatggtgaaaggagacacagctttggatatgagagga
cgctgcagtgccggtcagaaggtgctggcatccctgatcatccgcctggctctggcagag
accttctgtctgaactgtgggatcctggccctggatgagcctactaccaacctggaccga
gagaacattgagtcattggcacatgcccttgtagaaattattaagagccgctcacgccag
cgtaatttccagctgctgatcatcacccatgacgaggactttgtggagctcctggggcgg
tccagctacatcgaacacttctaccgcatccgtaagaaccaggaccagaactctgagatc
acaaagtgcagcatcacctccctctcttcctacctccactga
DBGET
integrated database retrieval system
