Thunnus thynnus (Atlantic bluefin tuna): 137196161
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Entry
137196161 CDS
T11154
Symbol
pcf11
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11 isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
tty Thunnus thynnus (Atlantic bluefin tuna)
Pathway
tty03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tty00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
137196161 (pcf11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tty03021
]
137196161 (pcf11)
03019 Messenger RNA biogenesis [BR:
tty03019
]
137196161 (pcf11)
Transcription machinery [BR:
tty03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
137196161 (pcf11)
Messenger RNA biogenesis [BR:
tty03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
137196161 (pcf11)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PCF11_charged
Pcf11_helical
Pfc11_Clp1_ID
CID
zf_PCFS4
Pcf11_C
Ribosomal_60s
Motif
Other DBs
NCBI-GeneID:
137196161
NCBI-ProteinID:
XP_067465090
LinkDB
All DBs
Position
13:30621743..30634614
Genome browser
AA seq
1638 aa
AA seq
DB search
MKKRFSDFGQIFIFIFIFFPVGCQVFIFPHLTDFLKKIFVFLFFPDFCVFCTQWVVRWGR
ALCSDHFVLKCCFNPCCFLNLLSSLLLQAPSAEKLPVLYLVDSIVKNVGGEYLAVFAKNL
ITSFLCVFEKVDENTRKSLFKLRSTWDEVFPLKKLYALDVRVNAVDSAWPIKPLPPTVNA
SIHVNPKFLKQSESEAPSPRPASTPAPAPTPPPAPAAATTVSQSSLTQEQLIRQQLLAKQ
KQLLELQQKKIELELEQTKAQLAGGFTLPTPTSVSSPTATTTAAKPTTQTAPVVRPWIPP
QTQTDTKPSTRDPRLNRSGPPAPPQPKEQPAGKKDSNATTGSPAPTPEKRLPEKPVRPDK
ARMPRKEVLEEKPKSKSPSPMPKSLQSKNKHAEAEGQKSADSTKKDPRLRKRPQDKTGDA
KDDELKEKKRCNDKKEREEAARAADPPRSNKLKLLNGSLTKHDREESVEKLEFKTGGNAR
THARKRTRSRSRSRSPTTSPKRKDRRSPKSRARSSSLSPSPSHKPGKPRRVRADEPQHGK
PGREDRLTPKKNQSESRRSKRPAEDRHSESRDSHSPRSHDGGGKETKDAPHRWRSGWEEN
KHLKLSEDSHVKPGPQRHKPYGTPTRPTTPRTPKHRLSVDANLQIPDVLNSASKKDLLRR
ASKRLESGEISQEDFLNMAHQIKHFFQYQEEKQQRSESWDDSDDFPAKKPPLLATPRDGM
GEAALTYYEHKSKLRKTQVTHRAAGEEWEGEESPEEGEEVAQGEKAGAGRSTGHLPSHKY
NRAPRDRQGERRSKEREEPRPPLGPMIEEYNHGKEFPTLKSLPGLRFRRRADPRESKRSE
VRFWSCGVSGSRSVTLQQGEREWNSPLTERQREEQKSGYDAPRRYAESRHPNPRRPEGPP
PSGTVVHRKCPSPAGLDAPVPRFERERLSPLHQKDSADSPVPRFESPNSEHSDDGPLNLD
AAPPPHPHPAPPPKSILKAPARGGPLPNVRQHSDSPGHTPPHDGGHPPTRYDGPAHMGPS
RPHPPGRYEGGGPGRYDDPSRFEGPHNQGPGRFDGGGPPHHNIPERFDGHVSHGPMRGGD
GMGRFDGPPHPQAPVRFQGQGPGPGHFEGPMQRFDAPPHFDNMAPGPGSGPMGFQQQRPI
RFENPPNQMGPMRFEGPGPMRFEGPRFDMPGGPHQGGPPRYDCPPGQQGPPRFAPQHNLQ
PPMRPMAPPIYDNPIPPQQNYNMAPQRFPEPMNPQFPAGPMAFPVQPNLQPAGNFNMQPA
PFNQPAAAPFYNPAAPAVSMQQPVNMMTNLNTPFLPQNAVPFRQQTPQVAPPENHFGQVD
VNDLLSKLISNGIIKPSQPDAAPAAGNEASPPPAAPPAVEEEEEEEQEMEEEENIPDLTS
FTIDDMKQRYESVVTKLYSGNQCCLCSMRFTAAQTDMYADHLDWHFRQNHAGKVASKKVT
HRRWYYTLTDWIEFEEIADLEERAKSQFFEKENEEEVQKNQAAAKEKEFQIVKATKDQVG
ESCEICQEPFETYWVEEEEDWFLKDAVRVDDKNFHPSCFEDYKNTSSYLDVTPSPNKLLT
DHPLSSFIKTEEEEEEETSCDVAAAAAAATAAAAAAAAAAAVSVKQEVECEAGELPVVKK
EEEPEVLTELQSEGNAAP
NT seq
4917 nt
NT seq
+upstream
nt +downstream
nt
atgaagaaacgtttttcggactttggacagatttttatttttatttttatattttttcca
gtcggatgtcaagtcttcatttttcctcacttgacagattttttaaaaaaaatttttgtc
tttttgttttttccagatttttgtgtattttgcacccagtgggtggtgaggtgggggagg
gcattgtgttctgatcattttgttctgaaatgttgctttaacccctgttgttttctaaac
ttgttgagttctctattgctccaggccccatctgccgagaagcttccagttttgtactta
gtggattccatagtgaagaatgttggaggagagtaccttgcagtgtttgctaaaaaccta
atcacttcatttttatgtgtctttgaaaaggtggacgaaaacactagaaagagtctgttc
aagttaaggtcgacgtgggacgaagtgttccctctgaagaagctgtacgcgctggacgtg
cgcgtcaacgccgtggactcggcctggcccatcaagccgctgccgcccaccgtcaacgcc
agcattcacgtcaaccccaagtttttaaaacagtctgagtccgaggcgccctccccgcgg
cccgcctccaccccggcgccggcgcccactcccccgccggcccccgccgccgccaccacc
gtcagtcagtccagcctgacgcaggagcagctgatccgccagcagctgctggccaaacag
aagcagcttctggagctccagcagaagaagatcgagctggaactggagcagaccaaagca
cagctggccggcggcttcacgctaccgacaccgacctcagtctcctctccgacggcaacg
actacggcggcgaaacccaccacccaaaccgctcccgtggtccgaccctggatccctcct
cagactcagaccgacaccaagccgtccacgagagacccgcgtctgaaccgctccggcccc
ccggctcctccccagcccaaagaacagcctgctgggaaaaaagatagcaacgccacaaca
ggaagtcccgcaccgacacctgagaaacggctgccggagaaaccggtccggcctgacaag
gccaggatgccgaggaaggaagtgttagaggagaagcccaagtccaagtctccgtctccg
atgccgaaaagcctccagagtaaaaacaagcacgcggaggcggagggccagaagtcagcc
gacagcacaaagaaagacccgcggctgaggaaacgcccgcaggacaagaccggagacgcc
aaagacgacgagctgaaggagaagaaacgatgcaacgacaagaaggagagagaggaggcg
gcgcgggccgccgacccgccgcgctccaacaaactgaagctgctgaacggctcgctgacc
aaacacgaccgcgaggagtccgtggagaagctcgagttcaagaccggcggcaacgcccgg
acgcacgccaggaaacgcacgcgctcacggtccaggtcgcgctcacccaccacctccccg
aagaggaaagacaggaggtcgcccaagagcagagcgaggagcagctccttgtccccgtcg
ccgtctcacaaacccggcaaacccaggagggtccgagccgacgagccgcagcacgggaag
cccggccgagaggaccggctcactcccaagaagaaccaatcagagagcaggagatcaaag
aggccggcggaggaccggcactccgagtccagagactcgcactcaccacgcagccacgac
ggcggcggcaaggagaccaaagatgctcctcaccgctggaggagcggctgggaggagaac
aaacatctcaagctgtcggaggattctcacgtgaaacccggacctcagagacacaaaccg
tacggcaccccaacgcgccccaccaccccccgaaccccgaaacaccgcctcagcgtggac
gccaacctgcagatacccgacgtcctcaactccgcctccaagaaggacctgcttaggagg
gccagtaagcgtttggagagcggcgagatttcccaggaggacttcctgaacatggcccac
cagatcaaacatttcttccagtatcaggaggagaagcagcagcgctcggagagctgggac
gactccgacgacttccccgccaagaaaccgccgctgctggccacgccccgcgacgggatg
ggcgaggcggcgctgacgtactacgagcacaagtccaagctgaggaagacgcaggtcacc
cacagagctgccggggaggagtgggagggcgaggaaagtccggaggaaggcgaagaagtg
gcgcagggcgagaaggcgggcgctggccgcagcacgggacacctgccgtcacataaatac
aaccgggcgccacgggacagacaaggtgagaggcggagtaaagagcgtgaagagccgcgg
cctccgctcggccccatgatcgaggagtacaaccacgggaaagagttccccacgctaaaa
tctctgccgggccttcgcttcaggaggagagccgacccccgagagtcgaagaggtcagag
gtcaggttctggagctgcggggtgtcagggtctcgatcagtgacacttcagcagggtgag
agagagtggaactcgccgctgacggagcgccagcgcgaggagcagaagagcggctacgac
gctccgcggaggtacgccgagtccagacaccccaacccccgcagaccagaggggccccct
ccctccggcaccgtggtccacaggaagtgtccgagcccggccggtctggacgcgccggtc
ccgaggtttgagcgtgagcgcctgtcgccgctccaccagaaagactctgcagacagtccc
gtccctcgcttcgagagccccaacagcgagcactcagacgacggaccgctcaatctggac
gccgccccccctcctcaccctcaccccgcccctccccccaaatccatcctcaaggcgccg
gcccgcggaggtccgctgcctaacgtccgccagcacagcgactctccaggacacactcct
cctcacgacggaggccaccccccgacccgctacgacgggcccgcacacatgggcccgtcc
agaccgcatcctccgggccggtacgaaggcggcggccccgggcgctacgacgacccgtcc
aggttcgaggggcctcacaatcagggtcctggcaggttcgacggcggcggaccgcctcat
cacaacatacccgagaggttcgacggacacgtgtcacatggtccaatgaggggcggagac
ggtatgggccggtttgacggcccgcctcaccctcaggcacccgtaaggtttcagggtcag
gggcccggaccggggcactttgagggcccgatgcagcgctttgacgcaccgccgcacttt
gacaacatggctcctggtcctggatctgggccgatgggcttccagcagcagcggccgatt
cgcttcgaaaaccctccgaaccagatgggcccgatgcggtttgagggccccggtccgatg
cggtttgagggccccaggtttgacatgccgggcgggccccatcagggaggacccccacgc
tacgactgcccccccggccagcagggcccccccaggtttgctcctcaacacaacctgcag
ccccccatgaggccgatggccccgcccatctacgataaccccatccccccccagcagaac
tacaacatggccccccagcgtttcccggagcccatgaaccctcagttccccgcggggccg
atggcgttcccggtgcagccgaacctgcagccggcaggaaacttcaacatgcagccggcg
ccgttcaaccagccggccgccgcccccttctacaaccccgcagcccccgccgtcagcatg
cagcagccggtgaacatgatgacgaacctcaacacgcccttcctgcctcagaacgccgtg
cctttcagacagcagactccgcaggtcgcccccccggagaaccacttcggtcaggtcgac
gtcaacgacctgctgtccaaactcatctccaacggcatcatcaaaccctcgcagcccgac
gccgcgccggccgccggcaacgaagcttcgccgcctcccgcagctcctcctgcggtggag
gaggaggaagaggaggagcaggagatggaggaggaggaaaacatcccggacctcaccagc
ttcaccatcgacgacatgaaacagcgttacgagagcgtggtgacgaagctgtactcgggg
aaccagtgctgcttgtgcagtatgaggttcaccgccgctcagaccgacatgtacgccgac
cacctggactggcacttcagacagaaccacgccggcaaggtcgccagcaagaaggtcacg
caccgccgctggtactacaccctgacggactggatcgagttcgaggagatcgccgacctg
gaggagcgggcgaagagtcagttcttcgagaaggagaacgaggaggaagttcagaagaat
caggcggcggcgaaggagaaagagttccagatcgtaaaagccaccaaagaccaagtgggc
gagtcgtgtgaaatctgtcaggagccgtttgagacgtactgggtggaggaagaggaggac
tggttcctgaaggacgccgtccgggtcgacgacaagaacttccatccttcctgttttgaa
gattataaaaacacgtcgtcatatctcgacgtcacgccgtcgcccaacaagctgctgact
gaccacccgctgagctccttcatcaagactgaagaagaagaagaagaagagacttcctgt
gacgtcgcagccgccgccgccgccgccaccgccgccgcagccgccgcagccgccgcagcc
gccgtctcagtcaaacaggaagtggagtgtgaggccggcgagcttcctgtggtgaagaaa
gaggaggagccggaggttttaacagagctgcagtcggagggaaacgcggcgccgtga
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