Thunnus thynnus (Atlantic bluefin tuna): 137197135
Help
Entry
137197135 CDS
T11154
Symbol
col17a1b
Name
(RefSeq) collagen alpha-1(XVII) chain isoform X1
KO
K07603
collagen type XVII alpha
Organism
tty Thunnus thynnus (Atlantic bluefin tuna)
Pathway
tty04382
Cornified envelope formation
Brite
KEGG Orthology (KO) [BR:
tty00001
]
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
137197135 (col17a1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
DUF2868
Motif
Other DBs
NCBI-GeneID:
137197135
NCBI-ProteinID:
XP_067466406
LinkDB
All DBs
Position
14:17723241..17748900
Genome browser
AA seq
1891 aa
AA seq
DB search
MEELTRQMDFSGGLSEENVVTETVTSTTRLTSLPPKGTSGSNHRNMSSGAGGLSLEKNVL
TLNSGTYFSSSSVGVNTSSYSSSSGVYLGGDSSGGGDGGGSYVDGEGYGSGSGGGGGGGG
TSGGSYLVSSVSKVRSSSSGGARRTQTAGSSRGGLSPAFRERKTVSSRSGGYDGSSSANS
SPEFTRKDYGNYCSSTTRGRSESRESEIRARLQSASPSASRWTELDDVKKLLKGRSSSVS
PTRSSGTLPVPKKASVETKTISVASQSVSTSFGSGVTSGGFNTIDTSGLYDNGLTSGQFD
TGVKTGQYDVSLKSGQYGTGVRSGQYDSLKPGQCETCVRSGQYDVSLKSGQYDTGVKSSQ
YDIGLCSGQYDTGVKSSQYDTGLKSEQYSAGVRSGQYDTGLKSEQYSAGVRSGQYDTSLR
SEQYSAGVRSGQYDTSLRSEQYSAGVRTGQYDTSTLDALLPSFSWSASTLPSSSATVVTG
NTSSYTYQGGTNNMAGGSSPLNPTSPSSLSVYGFQNNLAPTSGSVLTTSGANVNANLGGY
GVQKNVSNGGGVVSTGVSTTTRSQTEDAYKKDYKFLISEKENVPVKRDAEILILAKDSGK
QFTSGSSVHLGGGSISGDSIKKEKLISSYSETAPLKTETGNSYYGSSGVVMKDKATYAEI
HRDSGIFGGGGLCCCSDACCSWWKWLLGLLLLSLLLLGLLFGLIALAEDVRKLKNRVATL
EAEASAAAAHTSRLSGSSNDINAYAGGAAGAGGSHTDIHLAAGGGSGSGTGTRIGVAGAG
GSTGTSGNDIGTAGFGAAGAAGGAGGAGGASGASGTIGVSAGGAGTSVSGGTSTSGTSFS
GSTGSSGTSFGGGTGTSGTGFGHGTSTGGAVFTGLGTGVSGGHIDVAALQVTVQHMLRSE
MHSQAFRAFLVSSVQGERGLPGPKGDTGSKGDTGFPGMPGPPGAMGHPGADGQKGQKGSQ
GDHGLEGPPGIRGREGPAGPRGEPGFGTKGDRGAPGDPGVPGSVGPAGLAGPKGEPGAHG
LSGPPGQPGLQGFRGEAGAPGAKGDRGLAGFQGLKGEPGDKGLRGLQGEPGLPGLSGPAG
EKGSKGSMGLSGQDGAKGSRGDQGPAGPPGLRGPAGPPGDAGLQGAPGLQGPPGIPGNPG
QPGAKGEMGQAGRIINAAGSTSVGIPGPPGPSGPPGPAGPPGLSGPIGPAGLPGQPGPKG
DRGYKGDQGEAGVSVRTSETISSSRSERQFGAAGTSVVSGPPGPPGPPGPPGRPGDSRQG
PPGPPGPQGPPGYGRPGPKGDKGDSSFASSSGTYYRGPPGPPGTPGQKGETGSPGPRGYQ
GEPGLPGNPGRPGTSERVSTYAGGPAIQGPPGPPGPPGRPGPQGIKGDTGAPGLPGSSRG
SISVTSGPPGPPGPPGPPGYPGSFSSTEMHQYIASYLSRNRQAGIPGPPGPPGPPGIPGT
FSGSMEDISARIIAYIQRSGSGLSIGAQGPPGPPGPPGPGSGSLTVNALITMLQRDDVRR
YVLGPPGPQGPPGPPGASGGISGTYNVQEIATYVFNIMNERGIARGPPGPPGPPGPASTG
GHGFTTATIDYTALMRNSDFRSWLNSAVQHGPPGPPGVRGLPGPPGPQGPPGASTSTSTV
YGAGGRGYNLEEIQRYLQGSGFRGLPGPPGPQGPQGPQGPPGSHSGSVSFSGNFPRETIH
AEIQNYLTSDNVRRTIIGPPGPQGPRGQKGDRGEPGYVQGYVQSQSQSQGDSRYGSQHRE
IDVSKLTETLDYSNVALKVTDYIKNKGLLQDYLVEGPWRANVRAIQGPAGPPGPPGPPGY
SRVIGSYGNVTADLMDFFRTYGTIPGPPGNPGPRGERGYPGPRGEKGDPGRQGLPGLPGS
YTVQIPHRVQKRDTGNKVVRHQLRRRQANRG
NT seq
5676 nt
NT seq
+upstream
nt +downstream
nt
atggaggagttaacaagacagatggacttctcaggaggcttgtcagaagaaaatgttgtg
acagaaactgtaacttccacgaccagattgacttctctgccaccaaagggaaccagcgga
tcaaatcacaggaatatgtccagcggtgctggagggctgagcttggagaagaatgtctta
accctgaacagtggaacttatttctcttcatcctctgtaggtgtgaataccagtagctac
agctcctcctcaggagtttacctcggaggagactcctcaggaggaggtgatggagggggg
agctatgtagacggggaaggttacggaagcggaagcggcggaggcggaggcggaggcggc
accagcggtggcagttatctcgtcagctcggtgtcaaaggtcaggtccagctcgtctggt
ggtgccaggagaacgcagactgctggctcatcacgtgggggcctgtcgccagctttccgg
gagaggaagaccgtatccagccgctcgggaggttacgatggaagttccagtgcaaattcc
tctccagaattcacacgcaaagattatggaaactactgctccagcaccacacgagggagg
agcgaaagcagagagagtgagatcagagccagattacaaagtgcctccccctcagcctcc
agatggacagagttggatgatgtgaagaagctactgaagggtcgctccagcagtgtcagc
cccactcgctcttccgggaccctgcctgttcccaagaaagccagcgtggaaaccaagacc
atctctgtggcctctcagtcggtttcaacctcgtttggctctggtgtgacatcaggcggg
ttcaacaccattgatacatctggcctgtatgataacggtctgacatctgggcagtttgat
actggtgtgaaaacaggccaatatgatgtcagcctgaaatcggggcaatatggtactggt
gtcagatcaggccagtatgatagtctgaaaccaggacagtgtgagacttgtgtcagatca
ggccagtatgacgttagtctgaaatcaggacagtatgatactggtgtaaaatcaagccag
tatgatattggtctgtgctcaggacagtacgatactggtgtaaaatccagccagtatgat
actggtctgaaatcagagcagtacagtgctggggtgagatccggccagtatgatactggt
ctgaaatcagagcagtacagtgctggggtgagatccggccagtatgatactagtctgaga
tcagagcagtacagtgccggggtcagatccggccagtatgatactagtctgagatcagag
cagtacagtgccggggtcagaaccggccagtatgatacttccacactggatgctctgctt
ccgtccttctcttggtctgcctccaccctgccctcctcctccgccacggtggtcactggc
aacaccagcagctacacgtaccagggcggcaccaacaacatggcaggaggatcctcaccc
ctcaaccccacctcaccctcgtccctgtcagtttacggctttcagaataatctggcgccc
acttctggcagtgttctcaccaccagtggagcaaacgtaaatgctaatctcggaggttat
ggtgttcagaagaacgtgtcaaatggtggtggtgtcgtcagcactggagtctctacaacc
actagatcccaaactgaagatgcatataagaaagattataagttcctgatctctgaaaag
gagaacgttccagtcaagagagacgcagaaatactcattttggccaaagacagcggcaag
cagttcaccagcggcagcagcgttcatttaggaggagggtcgatttcaggagactccata
aagaaagagaagcttatttcaagctacagtgagacagctccactgaagacagagacaggc
aactcttactatggatcatctggagttgtaatgaaagacaaagccacctatgcagagatt
cacagggacagcggcatcttcggaggcggaggactgtgctgctgctccgacgcgtgttgc
tcctggtggaaatggctgctgggtctcctcctcctctccttgctcctgcttggactcctc
tttgggctcattgccttggccgaggacgtgagaaagctgaagaatcgagtggctactctg
gaggctgaagcctcggctgctgctgctcataccagtcgtctgtcaggttcttccaatgac
atcaacgcctatgcgggtggtgcagctggtgcgggtggctcccacactgacatacacctc
gctgctggaggaggttcgggctccggtactggaacacgaatcggagtggctggtgctggt
ggctccactggtacaagtggcaatgacatcggcactgctggctttggtgctgctggtgct
gccggtggtgcaggtggtgccggtggtgccagtggtgccagtgggaccattggagttagt
gctggaggtgccggcaccagcgtcagtggtggtaccagcaccagtggtactagcttcagt
ggtagcactggcagtagtggcaccagcttcggtggtggcactggcactagtggcaccggc
ttcggtcatggcactagcactggtggcgccgtcttcactggcctcgggacaggtgtaagc
ggaggacacatcgatgttgctgctctccaggtgaccgtccagcacatgctaagatcggaa
atgcattcacaggcattcagagcttttctagtatcctcagtgcagggagagagagggctg
cctggacctaaaggggacactggatctaaaggagatactggtttccctggaatgccaggt
cctcctggtgcaatgggccacccaggcgctgacggtcagaaaggacagaaaggaagccaa
ggtgatcatggcctcgaggggccaccaggtatccggggtcgtgaaggccctgctggcccc
agaggtgaaccaggttttggaacaaaaggtgacagaggtgctcctggagatccaggggtt
cctgggtctgtgggacctgccggcctggctggaccaaaaggtgaacctggagctcatggc
ctttctggaccaccaggtcaaccaggtcttcaaggtttccgtggagaggcaggggctcct
ggagctaaaggcgacagagggcttgctggatttcaaggacttaaaggtgaacctggtgac
aaaggtctcagaggtctgcaaggtgaacctggtttaccaggtctgtctgggccagctgga
gagaaaggatccaagggatcgatggggctgtctggccaagatggtgcaaaaggctcaaga
ggtgaccaagggcctgctggaccccctggactcaggggtcctgctgggcctcctggagat
gctggacttcaaggagcacctgggcttcaaggaccaccaggaataccagggaatccagga
cagccaggggccaaaggtgaaatgggtcaagcaggaagaatcattaatgcagctggctcc
acctctgtgggtatcccaggaccacctggaccttctggtcctcccggccctgctggacct
ccaggattatcaggtcccattggtcctgctggtctgcctggccagcctggtcctaaaggt
gacaggggatacaagggagaccagggagaagcaggagtatcagtgagaacgtctgaaact
ataagctcatccagatctgagaggcagtttggtgctgccggaacctcagtagtatctggc
ccaccaggcccaccaggtccacctggacctcctggacgtccaggagactcaagacaagga
cctccaggaccgcctggtcctcaaggtcctccaggttatggaagaccaggacctaaagga
gacaaaggagactcaagctttgcatccagctctggaacatattatcgtggaccaccagga
ccacctgggactcctgggcagaagggagaaacaggttctcctggaccaagagggtaccaa
ggtgaaccaggtttgcccggtaacccaggaagaccaggaacctcagagagagtgtcaact
tatgctggaggacccgcgatccaaggaccaccgggtccacctggacctcctggacgtcca
ggaccacagggaattaaaggtgacaccggagctcctggtttacctggctcttcacgaggc
tcaatctcagtcacctcagggcctcctggtcctccaggtcctcctggccctccaggctat
cccggctccttctcttctactgagatgcaccagtacatcgccagctatctaagtagaaac
agacaggctggcatccctggacctccaggtccacctgggcctcctggaatccctggaacc
ttctcaggctctatggaggacatctccgctcgcatcattgcatacatacaacgttcaggc
tcaggcctaagcattggcgctcagggtcctccaggaccacctggccctcctggccccggc
tctggatccctgactgtcaacgcgctgatcaccatgctacagagagatgatgtgaggaga
tatgtgttaggaccaccagggccacaaggaccaccaggaccaccaggggcatcaggagga
atatctggcacttacaatgtacaggagatagctacgtatgtcttcaacatcatgaatgag
agagggattgctagaggtccacctggaccaccaggccctcccggacctgcaagtacagga
ggccatggatttactactgctacgattgactacactgcactgatgagaaattcagacttc
cgctcatggcttaactctgctgtacaacatggtcctcctggtcctccgggtgttcgaggg
cttcctggtcctccaggccctcagggaccgccaggagcctccacttccacttccactgtg
tacggagcaggtggtcgcggatacaacttggaggaaattcagcgttacctgcaaggctct
ggcttcagaggtcttcctggccctcctggtcctcaaggtccacagggtccacagggtcca
ccaggcagtcacagtggatcggtttccttcagtggaaacttccctcgggagaccatccat
gctgaaattcagaactatctgaccagtgacaacgttcggcgcaccatcattggacctccc
ggtccccaaggaccgagaggtcagaaaggagatcgtggagagccaggttacgtccagggc
tacgtgcagagccagagccagtctcagggtgactctcgctatggttcccagcacagagag
atcgacgtcagcaagctcactgagacactggactactccaacgttgccttgaaagttacg
gactacatcaagaataaaggcctcctgcaggattatctggttgagggtccttggagagca
aatgtaagagcgattcaaggccccgctggtccacctggccctcctggaccacctggctac
agccgcgtcattgggtcctacggcaacgtcacagctgacctgatggacttcttcagaacc
tatggcaccatccctggtcctccaggaaatcctggaccaaggggagaaagagggtatcca
ggacctagaggagaaaagggtgatcctggacgccaaggtttaccaggactaccagggtca
tacactgtacaaattccacaccgagtgcagaagagggacacaggcaataaagtggttcgt
catcagctgcgtcgccgtcaagctaaccgtggctga
DBGET
integrated database retrieval system
