Thunnus thynnus (Atlantic bluefin tuna): 137198087
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Entry
137198087 CDS
T11154
Symbol
ddx39b
Name
(RefSeq) DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B isoform X1
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
tty Thunnus thynnus (Atlantic bluefin tuna)
Pathway
tty03013
Nucleocytoplasmic transport
tty03015
mRNA surveillance pathway
tty03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tty00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
137198087 (ddx39b)
09122 Translation
03013 Nucleocytoplasmic transport
137198087 (ddx39b)
03015 mRNA surveillance pathway
137198087 (ddx39b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tty03019
]
137198087 (ddx39b)
03041 Spliceosome [BR:
tty03041
]
137198087 (ddx39b)
Enzymes [BR:
tty01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
137198087 (ddx39b)
Messenger RNA biogenesis [BR:
tty03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
137198087 (ddx39b)
Spliceosome [BR:
tty03041
]
Complex C
Other components
EJC/TREX
137198087 (ddx39b)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
137198087 (ddx39b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
AAA_19
Motif
Other DBs
NCBI-GeneID:
137198087
NCBI-ProteinID:
XP_067467817
LinkDB
All DBs
Position
15:complement(30211683..30225981)
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AA seq
429 aa
AA seq
DB search
MTENDVDNELLDYEEDEVEAAGVGDVGDMSIRKEGVKGSYVSIHSSGFRDFLLKPELLRA
IVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVM
CHTRELAFQISKEYERFSKYMPTVKVAVFFGGLSIKKDEEVLKKDSPHIVVGTPGRILAL
TRNKTLNLRHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVC
RKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDALEFNQVVIFVKSVQR
CVALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIA
FNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDEGDARTLNDVQDRFEVNISELPDEID
ISSYIEPAR
NT seq
1290 nt
NT seq
+upstream
nt +downstream
nt
atgactgagaacgacgtagacaacgagctgttggactatgaggaggatgaggtggaggct
gcaggggtcggggatgtaggagacatgtcgataaggaaggaaggagtgaagggctcttat
gtgtccattcactcctctggatttagagactttctgctgaaaccagagctgctcagggcc
atagtggactgtgggtttgagcatccatctgaggttcagcatgaatgcatccctcaggcg
atactgggtatggatgtgctctgtcaggccaagtctggcatggggaagactgcagtgttt
gttctagctactttgcagcagctggagccagtcacgggacaggtgtcggtcctggtgatg
tgccataccagagagctggcctttcagatcagcaaggagtatgagagattttcaaagtac
atgcccactgtcaaggtggcagtgttctttggagggctgtctataaagaaagatgaagag
gtgctgaagaaagactctcctcacattgtggttggaacaccgggccggatcctggcactg
acacgcaacaagactctcaacctgcgtcatatcaaacatttcatcctggatgagtgtgat
aagatgctggagcagctcgatatgcgcagagatgtccaggagattttccgtatgactccc
catgagaagcaggtcatgatgttcagcgccaccctgagcaaagagatccgtccggtctgc
agaaagttcatgcaagatccgatggaaatctttgtggatgatgagaccaagctgaccctg
catgggctgcagcagtactacgtcaagctgaaggacaatgagaaaaacagaaagctcttt
gaccttctggatgctctggagttcaatcaggtggtgatctttgtgaagtctgtccagcgg
tgtgtagctctggctcagctgctggtggagcaaaacttccctgccattgccatccacaga
gggatgcctcaggaggaacgtttgtctcgctaccagcagttcaaggactttcagaggaga
atcctggtggccaccaacctgtttggacgggggatggacattgagagagtcaacattgcc
tttaattatgacatgccagaagactctgacacttacctacacagggtggcccgagcaggc
aggtttggcacaaagggcctggctatcacctttgtgtctgatgagggcgacgcccgcaca
ctcaacgacgtccaggaccgcttcgaggtgaacatcagtgagctgcccgacgagatcgac
atctcttcttacattgaaccagcgcgatag
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integrated database retrieval system
