Thunnus thynnus (Atlantic bluefin tuna): 137198686
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Entry
137198686 CDS
T11154
Symbol
skic2
Name
(RefSeq) helicase SKI2W
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
tty Thunnus thynnus (Atlantic bluefin tuna)
Pathway
tty03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tty00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
137198686 (skic2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tty03019
]
137198686 (skic2)
Enzymes [BR:
tty01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
137198686 (skic2)
Messenger RNA biogenesis [BR:
tty03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
137198686 (skic2)
mRNA degradation factors
3'-5' decay
Ski complex
137198686 (skic2)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
Ski2_N
MTR4_beta-barrel
DEAD
Helicase_C
DEXQc_Suv3
ResIII
MTR4-like_stalk
DUF3516
HTH_23
Motif
Other DBs
NCBI-GeneID:
137198686
NCBI-ProteinID:
XP_067468667
LinkDB
All DBs
Position
15:11624988..11642534
Genome browser
AA seq
1250 aa
AA seq
DB search
MDRINVPPPGPMDLSLSLLEMGCSGRFELITHPLPGQPLAPQSTLPHGLPPTSLNLETEV
EKQFLRDPAWLPIHDTDFAFQKFLKVTQRDVNVDSLLKCAASPLHSELSVIRDPTTGMLL
DFTEVLLENTGLSAKNSLSLQRQPGPPSESLRGSNTNYPFQPGGMEELTLDQIKKKSELE
EDIDFENDLLRVPPGFKAGMDFADKDAKTAKAEVNLMSLLSTFDGIPDLQPETEAKEEGK
GSEEAPKLPRTNSLEDLGIKDAVSSSSPPEKGKDEKSKPEEKPVEKPVENKKWAIPVDIT
SPCDDFYKRIPNPAFKWPFELDVFQKQAVLRLEAHESVFVAAHTSAGKTVVAEYAIALSQ
KHMTRTIYTSPIKALSNQKFRDFKNTFGDVGLLTGDVQLSPESSCLIMTTEILRSMLYNG
SEVIRDLEWVIFDEVHYINDAERGVVWEEVLIMLPDHVSIILLSATVPNALEFSEWIGRI
KKRHIYVISTLKRPVPLEHHLYTGNSTKTQKEMFLLVDPTGNFLTKGYYAAIDAKKERTS
KHAQTFGTKNTSHNTTASQDRAVWLSLLHFLSQRQQTPVVAFTFSRTRCDDNARSLESMD
MTTSIEKAEIHSFFQKSLSRLRGGDRQLPQILTMRDLLKRGIAVHHSGILPILKEVIEML
FSRGLVKVLFATETFAMGVNMPARTVVFDSIRKHDGTGFRNLLPGEYIQMAGRAGRRGLD
ATGTVIILCKAGVHDMSDLHVMMLGKPTILQSQFRLTYTMILNLLRVEALRVTDMMRRSF
SESHRDTQAQEKRISHLKQTLSTLPPLDTDGQLSDLVSYYHTVTELRTTTEALQRAMLES
VNGLKALSVGRVVVVNNKQHLNALGVILQVSNDAVNRTFTALIICDKGNEEGEGKGDDNA
AFPHLYNTALFIPEGPCSHTVQKLKLQDITAITVKTLKVIPDRIIDNYNKRQQPRFRHDP
PGQAISTATQELLRLAEANPSGIGTLDPVNDLQLKSVDVVEDSMRLRVLRDSLRDFNCIH
SPTFAEQFARVKERMSVQEELDKLLFLVSDQSLSLLPEYHQRIKVLQSLQYVDSSGAVQL
KGRVACQISSHELLLTELLFENVLSPLAPEESAALLSCLVFTQNTQVEPHITNTLQEGID
RVLSVAKRIGELQRECGIPQTAEEFVGQFKFGLTEVVYCWARGMPFAEIAQLTDVQEGTV
VRCIQRLDEVLKEVRQAARIVGDSVLGSKMEKASLAIRRDIVFTASLYTH
NT seq
3753 nt
NT seq
+upstream
nt +downstream
nt
atggacagaataaatgtgccccctccgggccccatggacctttcactgtccctgctggag
atgggatgctctggcagatttgaactcatcacgcatcccctccccggtcagcctttagct
ccacagagtacgctcccccatgggctgccccccaccagcctgaacctggagacagaagtg
gagaaacagtttttaagggaccctgcctggcttcctatacatgacacagacttcgccttt
cagaagtttcttaaagtgactcagagagatgttaatgtcgactctctgcttaagtgcgct
gcgtctccactccactctgagctctccgtcatcagagatccaaccacagggatgctgctg
gacttcacagaggtgctattggagaacactggtctctcagcgaagaactcgctgtcattg
caacgacaacccggacctccttcggagagccttcgaggaagcaacaccaactaccccttc
cagccaggaggtatggaggaacttactctagaccaaatcaagaagaaatctgagctggag
gaggacatagactttgagaatgatttactcagagtccctcctggatttaaagcagggatg
gacttcgctgacaaagatgccaaaacggcaaaggcggaggtcaacctcatgtccctcctg
tccacatttgatggcatccctgacttgcaacctgagacggaggcgaaggaggaaggcaaa
ggaagtgaggaagctcctaaactacccagaacaaacagccttgaggacctgggcatcaag
gatgctgtgtcatcctcctctcccccagagaagggaaaagatgagaaatcaaagccagag
gagaagccagtggagaagccagtggagaataagaaatgggccatccctgttgacataact
tcaccctgcgatgatttctacaaacgcatccccaaccctgctttcaagtggccgtttgag
ctggatgttttccagaaacaggctgtgctgcggctggaggcacatgagtctgtgttcgta
gctgcgcacacgtcagctggcaaaacagtggtggccgaatatgccatcgccctctcacag
aaacacatgacaaggaccatctacacctcccctataaaggccttgtctaatcagaagttc
agagactttaagaacacttttggggacgttggactcttgacgggcgacgtccagctcagt
cctgaatcttcatgcctcatcatgaccactgagatcctcaggtctatgctttacaacggc
tcagaggtcatcagagacttggagtgggtgatcttcgacgaggttcactacattaacgat
gccgagagaggcgttgtgtgggaggaggttttgattatgcttcccgatcatgtcagcatc
attctcctgagcgccacagtgccaaacgccctggagtttagcgagtggatcggtcgcatt
aagaagaggcatatttacgtgatcagcacactgaagagacctgtgcctttggagcatcat
ctgtacactggaaacagcactaagactcagaaagagatgttcctgctggtggatcctaca
ggcaatttcctcactaaagggtactatgcagctattgatgccaagaaggagcgcaccagt
aaacacgcccaaacttttggcacgaaaaacacttcccataacaccacagctagtcaggac
cgagcggtgtggctcagcctactgcacttcctgtcccagcggcagcagacccccgtggtc
gcgttcaccttctctcggacgcgctgtgacgacaatgcccgctcgctggagtccatggat
atgaccacctccatagagaaggcggagatccactcgttcttccagaagagtctgagtcgc
ctgcgaggaggagacagacagctgcctcagatcctgacgatgagggacctgttgaagaga
ggaatagcggtccatcacagcgggatcctgccgatactgaaggaggtcattgagatgctc
ttctcacgaggtctcgtaaaggtgctgtttgccactgagacatttgcaatgggagtaaac
atgcctgccaggaccgtggtgttcgacagcatcaggaaacacgacgggactggctttaga
aatctgctgcccggtgagtatattcagatggcgggaagagcaggcaggagaggtctggac
gccaccggcaccgtcattattctctgcaaagcgggcgttcacgacatgtcggatctgcat
gtcatgatgctgggtaaacctaccatcctccagtcccagttcagactgacctacactatg
atcctcaacctgctgcgggtggaggccctccgtgtgaccgacatgatgaggaggagcttt
tctgagagccacagagacactcaggcccaggagaaacggatcagccatttgaagcagacg
ttgtccactctgcctcctctggatacagacggccagctgtcagacctggtgtcttactac
cacaccgtgacggagctacggaccaccacagaagccctgcagcgcgctatgctcgagtct
gtcaacgggctaaaagctctgtctgtgggtcgagtcgtggtagtcaacaataagcagcat
ctcaatgccctgggagttatcctacaggtgtccaatgacgctgtgaaccgcaccttcacg
gctctcatcatctgtgacaaaggcaacgaggaaggggaaggaaagggcgacgacaacgcc
gctttccctcacctctacaacacggctctcttcatacctgaaggtccttgcagccacacg
gtgcagaagctgaagctacaggacatcactgccatcacagtgaaaaccctcaaagtgatt
cccgacaggatcatcgacaactacaacaagaggcaacagccacgattcaggcatgaccct
cccggccaggccatctccacggcaacccaggagctcctgcgattggccgaggccaacccc
agcgggatagggacccttgaccccgtgaacgatctccagctgaagagcgtcgacgtggtc
gaagactccatgcggctccgtgtgctgcgggacagcctccgagatttcaactgcatccac
tcgccgactttcgcggagcagtttgctcgagttaaggagaggatgagtgtgcaggaggag
ctggacaagctgctcttcctggtgtccgaccagtctctgtctctgctgcctgaataccac
cagaggatcaaggtgctgcagtccctccagtacgtcgacagcagcggcgcggtgcagctg
aaaggtcgggtggcctgtcagatcagcagccacgagctgctgctgaccgagctgctgttc
gaaaacgtcctgagccctctggcgcccgaggagagcgccgccctgctgtcctgtttggtc
ttcacacagaacacgcaggtggagccgcacattaccaacacgctgcaggagggtatcgat
cgcgtgctgtcagtggccaagcgtatcggagagctgcagagggaatgtgggataccacag
acggctgaggagtttgtaggccagttcaagtttggcctgacagaggtggtgtactgctgg
gccagaggcatgcctttcgcagagatcgcccagctgacagacgtccaggagggcacggtg
gtccgctgcatccagcgtctggacgaggtgctgaaggaggtgcggcaggctgcgcgcatc
gtgggagactccgtcctggggagcaagatggagaaggcctccttggccatccgcagggac
atcgtcttcaccgcttccctctacacccactga
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integrated database retrieval system
