Thunnus thynnus (Atlantic bluefin tuna): 137199360
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Entry
137199360 CDS
T11154
Symbol
vps39
Name
(RefSeq) vam6/Vps39-like protein isoform X1
KO
K20183
Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39
Organism
tty Thunnus thynnus (Atlantic bluefin tuna)
Pathway
tty04140
Autophagy - animal
tty04142
Lysosome biogenesis
tty04145
Phagocytosis
tty04148
Efferocytosis
tty05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
tty00001
]
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagocytosis
137199360 (vps39)
04142 Lysosome biogenesis
137199360 (vps39)
04140 Autophagy - animal
137199360 (vps39)
04148 Efferocytosis
137199360 (vps39)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
137199360 (vps39)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
tty04131
]
137199360 (vps39)
Membrane trafficking [BR:
tty04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
137199360 (vps39)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Vps39_1
CNH
zf-Vps39_C
TPR_Vps41
Clathrin
VPS18_solenoid_2nd
Beta-prop_RIG_2nd
Motif
Other DBs
NCBI-GeneID:
137199360
NCBI-ProteinID:
XP_067469707
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All DBs
Position
16:6820704..6848192
Genome browser
AA seq
876 aa
AA seq
DB search
MHDAYEPVPILEKLPLQIDCLAAWEDWLLVGTKPGHLLLYRIKKDAGTNRFEVTLEKSNK
NFSKKIQQLYVVSQYKILVSLLENNIHVHDLLTFQQITVVSKAKGATLFACDLQQTGPGE
ERLRMCVAVKKKLQMYYWKDREFHELQGDFGAPDIPKSMAWCENSICVGFKRDYYLIRMD
GRGSIKELFPTGKQLEPLVAPLADGKVAVGQDDLTVVLNEEGVCTQKCALNWTDIPIAME
HQPPYIIAVLPRYVEIRTFEPRLLVQSVELQRPRFITSAGPNIVYVASNHFVWRLVPVSI
ASQIRQLLQDKQFELALQLAKMKDDSDGDKKQQIHHIQNLYAFNLFCQKRFDDSMQVFAK
LGTDPTHVIGLYPDLLPSDYRKQLHYPNPLPTLSGAELEKAHLALIDYLTQKRSHLVKQL
NDSDPSTTSPLMEGTPTIKSRKKLLQIIDTTLLKCYLHTNVALVSPLLRLENNHCHIEES
EYVLKKAHKYSELIILYEKKGLHQKALQVLLDQSTKANSPLKGHERTVQYLQRLGVENLG
IIFEFSPWVLKICPEDGLKIFTEDLTEVETLPRDKVLNFLKEGFKELAIPYLEHIIYVWD
EKGPEFHNVLIQLYLERVQSLMKQYLNSLPEGVPAVAAGKEDGALGEFRNKLLSFLDISI
SYEPARLISDFPFDGLLEERALLLGRMGKHEQALFIYVHILKDTRMAEEFCHRYYDSLVE
GNKDVYLSLLRMYLSPPDVHCLGPIKMELSEPQANLQAALQVLELHHSKLNTTKAINLLP
ANTQIREIRVFLESVLEEKAQRKRCDQVLKSLLQAEFLRVQEERIFHQQVKCVITEEKTC
RVCKKKIGNSAFARYPNGVVVHYFCCKDRNVCPTEQ
NT seq
2631 nt
NT seq
+upstream
nt +downstream
nt
atgcatgacgcgtatgaaccagtgcctattttggagaagcttcctctccagattgactgt
cttgcggcctgggaggactggctgcttgttggaactaagccagggcatctccttctctac
cgaataaagaaggacgcaggcaccaaccggtttgaagtgacactggaaaaatccaataag
aacttctcaaagaagattcagcagctttacgtcgtctcacaatacaaaattcttgtcagt
cttctggagaacaacatccacgttcatgacctcctgacctttcagcagatcactgtggtg
tccaaagccaaaggagccacgctcttcgcttgtgacctgcagcaaaccggcccaggagag
gaaagactgagaatgtgcgtcgcagtgaaaaagaaactccagatgtattactggaaggat
agagagttccatgagctgcagggggactttggtgcaccagatattccaaagtccatggct
tggtgtgaaaactccatatgtgtcggtttcaaaagagactattacctcattcggatggat
ggccgtggctccatcaaggaactctttcccacagggaagcagttggagcctctagttgcc
ccactggctgatgggaaggtggctgtcgggcaggatgacctaactgtggttcttaatgaa
gagggtgtttgcacccagaagtgtgccctgaactggacggacatccctatagcaatggag
caccagcctccatacatcatagcagttctccctcggtacgtggagatccggacctttgag
ccgaggctgctggtgcaaagtgtggagctgcagagacctcgcttcatcacctcagcaggg
ccgaatattgtgtatgttgccagcaaccactttgtgtggcgcctggtgcccgtgtccata
gccagccagatccgacagcttcttcaggacaagcagtttgaattggctcttcagctggcg
aagatgaaggatgattcagatggtgataagaagcagcagatacatcacatccagaatctc
tatgccttcaatctgttttgccagaagagatttgatgactccatgcaggttttcgccaaa
ctcggcacagatcccacccatgtgatcggactgtaccctgacctgctcccgtcagactac
cgcaagcagttgcactatcccaaccctctgcctacgctatctggggcagagctggagaag
gctcatcttgctctaattgattacctcacccagaaacgcagccaccttgtgaaacagctg
aatgactctgacccttccacaacatccccactcatggagggcacgcccactattaaaagc
cgcaaaaaactcctgcagatcattgacaccaccctgctgaaatgttacctgcacaccaac
gtggccctggtgtcccccctccttcgactggagaacaaccactgtcacatcgaggagagc
gagtatgtcctgaagaaggctcacaagtacagtgagctcattattctctatgagaagaag
ggactgcaccagaaagctctgcaggtgctacttgaccagtccaccaaggccaactctccg
ctgaagggccacgagcgaacagtacagtacctccaaaggctgggagtggagaatctcggc
ataatctttgagttttcgccctgggtgcttaagatctgccctgaggatgggctaaagatc
ttcactgaggacctaacagaggtggagactttgcccagagacaaggtgctgaactttctg
aaggagggctttaaggagctcgccatcccatatttggagcacattatctacgtgtgggac
gagaagggcccagagtttcacaacgtgctgatccagctctacttggagagggttcaaagc
ctcatgaaacaatacctcaactcactgccagaaggggttccagcagtcgctgcggggaaa
gaggacggcgctctaggagagttcaggaacaagctgctgtcattcctggatatttctatc
agctacgaaccagcgagactcatcagtgactttccctttgacggcctcctggaggaacga
gccctgcttctgggtaggatgggtaaacacgagcaggcgcttttcatctatgtgcacatc
ctgaaagacacccgcatggctgaagaattctgtcaccggtattacgacagtttagttgaa
ggcaataaagatgtttatctgtctctgctccgtatgtacctgtcaccccctgacgtccac
tgcctggggcccatcaagatggagctgtcggagccacaggccaacctccaggcagccttg
caggtcctggagctgcaccacagcaagctcaacaccaccaaggccatcaatctgcttcca
gcaaacacccaaatccgagagatccgggtcttcctggagagcgtcctggaggagaaggcg
cagaggaaacgctgcgaccaggtgctgaagagtctgctgcaggccgagttcctcagagtg
caggaggagcgcatcttccaccagcaggttaaatgtgtcattactgaagaaaagacctgc
agggtctgcaagaagaaaataggcaacagcgcgttcgccaggtatcccaacggcgtggtg
gtgcattacttctgctgcaaagaccgcaacgtgtgtcctactgagcagtaa
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