Thunnus thynnus (Atlantic bluefin tuna): 137199711
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Entry
137199711 CDS
T11154
Symbol
nrde2
Name
(RefSeq) nuclear exosome regulator NRDE2
KO
K26109
nuclear exosome regulator NRDE2
Organism
tty Thunnus thynnus (Atlantic bluefin tuna)
Brite
KEGG Orthology (KO) [BR:
tty00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tty03019
]
137199711 (nrde2)
Messenger RNA biogenesis [BR:
tty03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
137199711 (nrde2)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
NRDE-2
TPR_14
HAT_PRP39_N
HAT_Syf1_CNRKL1_N
RdRP_3
Motif
Other DBs
NCBI-GeneID:
137199711
NCBI-ProteinID:
XP_067470295
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Position
16:complement(23882597..23894913)
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AA seq
1194 aa
AA seq
DB search
MALFPAFADVSNDSKVEDSSKELEWLKNKSFQTGEALSLHNRFLEKTTERLSEKDSSVDR
DEKESDVPPKKKKKKSEKHRKKKKKHKKKSGRYSDSSGSDSETIYPSDLKKEQEADRLQD
APLASRFSWLDDLKLPTEQPFCVDSKPDPANWTYKSLYRGDVARYKRKGRSSLGLDPRRQ
EVSWDESESNKKQKGGDKKKAADRYFSTVSRQLLRSQHPVPTLPTIPECSDVISPTSFLP
LGDDEGENKGGETGDRVQTSSVNPLGVYDSSTTLWLQGKGQQDQTEHQKQDKQTGQSANL
LAGRTEEFNRRLREQPADTQLWIQFIQYQDELSATAFGGEEEQQGTDSAERRKSSYRAVL
EKKLSIAERAVATNPGCIALQLERLRICQELWEPSVLAKEWKKLVFLHPNSALFWREYLL
FTQSYFSNFTVAKVNSAYGKCLSTLSAVRDGSMVSHPALPGIEEDMLDIFTQQCHFLRQC
GHSEKAISLFQAMIDFTFYKPESVQKMSTKQQVEFFEPFWDSGEARVGELGARGWKAWML
QQERGGWLQPSAEEDEEEEEDEEEVKDRSQPRWTVWLDVESSREAAHWLPWRPDKAKGQS
EEDCDDPDRQVLFDDIGSSLICLSSPELQLRLVLNFLSFLGLPVDSAAPCQLGLLLESLS
LLTQGNDLQRPLTSHDLPGPGVNSVGHMTTLQGTRKLAGLGKHGERFVTNVFNMVQPVLP
AHHRAVLSLSWMQYEKLKVLRCLRSGNKKRLRSQGKSSKRVAKRLLKEPDNRSSLMLWRE
YAHLEWMLGNLDEARKVFSTATAIGGTKGLSSPTLCELCLLWAQLEVEDGASVRGGGLSD
VTASPAVCVLTRLAEGTSSSSSSSSQSLSPVSILKARKSYEQALTASLAALDQDPHNPQA
NRKGQEDLRGLVSCYALFQYLTVGIQAAHTVYSQARERMEELHRTLTFDKQLSSNEEANL
ASTDASHSAATSGPTSRQCVNRLASECEILAVQHAALLRHHNSISVFPLATLRQTLTSAL
STWPSSAPLWSIYVQVENRYHSAGRARRFFHSVTRDNSSVVPRLFAIVAEQQRKQLVDAA
QRSCCNDAALPILPENGLSNRIRGLFESTIATEMGAHCPLLWRMYMHFLVSEGKVDKATG
IFYRALQNIPWSKGLYMDAVQLFPDRLQEFVDLMTEKELRLRLPLEELDILLED
NT seq
3585 nt
NT seq
+upstream
nt +downstream
nt
atggcgctgtttccagcttttgcagatgtatcaaacgacagtaaagttgaagattcgtcc
aaagagttagaatggctgaaaaataagagttttcagaccggggaggctctctctcttcac
aatcgttttttagagaagaccactgaaaggctgagcgagaaggactcaagtgtagacaga
gatgagaaagaaagtgatgtgccacccaaaaagaagaaaaagaagagtgaaaagcataga
aaaaagaagaaaaaacacaaaaagaagagcgggaggtattcggattctagtgggtctgac
tctgaaaccatctacccaagtgatctcaaaaaggaacaagaggcagacaggctccaggat
gctccgttagcaagtcgtttctcctggttggatgacctcaagttgcccacagagcagcca
ttctgtgtggacagtaaaccagacccagccaactggacgtacaagtccctgtacagagga
gacgtagcaaggtataagaggaaaggtcggtcgtcgttgggtctggacccgcgcagacag
gaagtcagctgggatgagtcagagtcaaataagaaacagaaaggcggggacaagaagaaa
gcagcagacagatacttctctacagtcagtcgccagctgctcaggtcccagcaccccgtt
cctacgttaccaacgattcctgagtgtagtgatgtcatcagccccacctccttcctcccc
ctgggtgatgatgagggggagaacaaaggaggagagacaggtgacagagtgcagacatcc
tcagtaaatcccctcggtgtgtacgactcctctacgactctctggctgcaggggaaggga
cagcaggaccagacggagcatcaaaagcaggacaaacagacagggcagagcgctaacctt
ttggccgggaggactgaagagtttaacaggcggctcagagagcagccagcagatacgcag
ctatggatacaatttatacagtaccaggatgagctcagtgcaacagcgtttggaggtgag
gaggagcaacagggcacagattcagctgaacgtcgtaagtcttcctaccgagctgtcctg
gagaaaaagctgagcatcgcagagcgcgccgtggccaccaacccaggctgcatcgctctg
cagctggagaggctcaggatctgccaagagctctgggagccatcagttctggctaaggaa
tggaagaaactggtgttcctccacccaaacagtgccctcttttggagggaatatctgctg
ttcactcagagctacttcagcaacttcactgtggctaaagtcaactctgcctacgggaag
tgtctaagcacgctcagcgctgtgcgggacggcagcatggtctctcacccggccctgcct
gggattgaggaggatatgttggatatcttcacccagcagtgtcatttcctgcgtcagtgt
ggtcactcagagaaggcgatttctctgtttcaggccatgatcgactttactttctacaaa
cctgaaagcgtacaaaagatgtccaccaagcagcaggtagagttctttgagccgttttgg
gacagcggggaggcgagagttggggagttgggggccagaggttggaaagcctggatgctc
caacaagagcgaggagggtggctacagcccagtgcagaggaggatgaggaggaggaagaa
gatgaagaggaggtgaaggatcggagccagcccagatggacagtctggctggatgtggag
tcgtctcgcgaagcagctcactggttgccctggagacctgacaaagccaagggccaatcg
gaagaggactgtgacgacccggacagacaggtgttgtttgatgacatcggctcatccctg
atttgtctgtcttcaccagagctccagctccgtcttgttctcaatttcttgtcattcctg
gggcttcctgtggactctgctgccccctgtcagcttggcctgttgctggagagcctgtca
ctactcactcagggtaatgatctccagcgtcctctgacctcccacgacctacctggcccc
ggggttaactctgtaggtcacatgaccactcttcagggaaccaggaagctggcggggctt
gggaagcacggcgagaggtttgtcaccaatgtgttcaatatggttcaacctgtccttcct
gcccaccaccgagctgtcttatcactcagctggatgcagtatgagaaactcaaggtcttg
cgctgcctgcgcagcggcaacaagaagcgtctccgctctcagggcaagagcagcaagcgg
gttgccaaacgactgctcaaagaacctgacaaccgctcatcgttgatgctgtggcgggag
tacgcccacctggagtggatgctgggtaaccttgacgaggctcgcaaagtgttctccaca
gccacagcgatagggggaaccaaagggctgagtagccccaccctctgtgagctgtgtctg
ctgtgggcccagctggaggtggaggacggagcaagtgtgcgaggagggggactaagtgat
gtaaccgcgtccccggctgtgtgtgtactaactaggctagcagaaggaacctcctcatca
tcctcttcatcttcccagtctctctctccagtttccatcctgaaagcaagaaagtcatat
gaacaagctctgactgccagcttggcagcactggatcaagacccccacaaccctcaggcc
aacagaaaaggtcaagaggacttgagaggtctggtcagctgctacgctctgttccagtac
ctcacggtgggcatccaagcagctcacactgtctacagtcaggcaagagagaggatggag
gagctgcaccgcacgctaacatttgacaagcagctgagcagtaatgaggaagccaacctt
gccagcactgatgccagtcactctgcagctacttccggcccgacaagcaggcagtgtgtt
aacaggctagcctctgagtgtgagatattagcagtacagcacgcagcattgctcaggcac
cataacagcatcagtgtgtttccactggcaacactgagacagacactgacatctgccctt
tcaacctggcccagcagcgcccctctctggagcatatatgtacaggtggagaatcgttac
catagtgctggccgggcgcgtcgcttttttcactctgttaccagggacaacagcagtgtt
gtgccgcgcctctttgccattgttgctgaacaacaaaggaagcagctggtggacgctgct
cagaggtcttgttgcaatgacgctgccttgcccatcctgccagagaacggccttagcaac
cgtatccgtggactgtttgaaagcaccatagcaacggagatgggtgctcactgtccttta
ctttggaggatgtacatgcacttcctggtgtcagaagggaaggtggataaagccacaggg
atcttctacagggctttacagaatattccctggtctaagggtttgtacatggatgcagtg
cagctgtttcctgaccgtctgcaggagtttgtagatctgatgacagagaaagaactacga
ctcagactacctttagaagaactggatatactactggaggactga
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