Tenuifilum thalassicum: FHG85_04450
Help
Entry
FHG85_04450 CDS
T06728
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
ttz
Tenuifilum thalassicum
Pathway
ttz03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ttz00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
FHG85_04450 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ttz03021
]
FHG85_04450 (rpoC)
03400 DNA repair and recombination proteins [BR:
ttz03400
]
FHG85_04450 (rpoC)
Enzymes [BR:
ttz01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
FHG85_04450 (rpoC)
Transcription machinery [BR:
ttz03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
FHG85_04450 (rpoC)
DNA repair and recombination proteins [BR:
ttz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
FHG85_04450 (rpoC)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
BSH_YknX
Apocytochr_F_C
RPOC_hybrid
Peptidase_M23
BSH_RND
Motif
Other DBs
NCBI-ProteinID:
QKG79541
UniProt:
A0A7D4BRC2
LinkDB
All DBs
Position
1074011..1078279
Genome browser
AA seq
1422 aa
AA seq
DB search
MSFRRENKVKSNFSKITISLASPEEILERSSGEVLKPETINYRTYKPERDGLFCERIFGP
VKDYECHCGKYKRIRYKGIVCDRCGVEVTEKKVRRERMGHISLVVPVAHIWYFRSQPNKI
GYLLGLPAKKLDSIIYYERYVVVNPGIKAADGLNKLDFLTEEEYLDILETLPKENQYLDD
DDPNKFIAAMGAEALYKLLQRIDLDELSYELRHKANTETSQQRKSEALKRLQVVEAFRES
KNINKPEWMILKVIPVIPPELRPLVPLDGGRFATSDLNDLYRRVIIRNNRLKRLIEIKAP
EVILRNEKRMLQEAVDSLFDNSRKSNAVKTDANRPLKSLSDSLKGKQGRFRQNLLGKRVD
YSARSVIVVGPELNMHECGLPKDMAAELYKPFIIRKLIERGIVKTVKSAKKIVDRRDPVV
WDILENVMKGHPVLLNRAPTLHRLGIQAFQPRLIEGKAIQLHPLSCTAFNADFDGDQMAV
HLPLGNEAILEAQILMLGSHNILNPANGAPITVPSQDMVLGLYYITKPRKGAKGEGTVFY
SPEEVIIAHNEKAVDLHAIVKVRINTIDENDQPVVKIIETTVGRVIFNQYVPQQMGYINE
LLTKKSLRDIIGKVLKKTNVSTTAKFLDDIKNLGYYMAFKGGLSFNLDDVIIPEEKVELV
EEGYAQVDEVMANYNMGLITNNERYNQIIDIWTHTNAKLTLTLMKKLSEDKQGFNSIYMM
LDSGARGSKEQIRQLCGMRGLMAKPQKSGATTNEIIENPILSNFKEGLSVLEYFISTHGA
RKGLADTALKTADAGYLTRRLVDVSQDVIITENDCGTLRGLVATAIKKNEDVVETLYERI
LGRTTVHDVYHPLTGELIVAAGEEITEEIAQVIEESPIEQVEIRSVLTCESRKGVCAKCY
GRNLATGRMVQKGEAVGVIAAQSIGEPGTQLTLRTFHVGGTAGSIISDSKLVSRYDGRAE
IEELKTVQREDENGKYHVVIGRLAEIRIVDLNTGITLSTNNIPYGSKLYINNGDTVKKDQ
LICEWDPWNAVIISEASGKVSYDALIKEVTYREESDEQTGYREKVIIETRDKSKNPAIKI
MSDGDEVIKLYNLPVGAHLTVEEGATVEAGDILAKIPRAVGKAGDITGGLPRVVELFEAR
NPSNPAVVSEIDGEVAFGKVKRGNREIIVTSKTGEVKKYLVPLSKQILVQENDYVRAGTP
LSDGAITPRDILAIKGPTKVQEYIVNEVQEVYRMQGVKINDKHFEVIVRQMMRKVEIIDP
GDTRFLEGQLVDKWEFIEENDNIFDKKVIVEPGDATHLRPGMIITARQLRDENSKLKRRD
LKLIEARDAVPATSNQVLQGITRAALQTSSFMSAASFQETTKVLNEAAIHGKIDTLEGLK
ENVICGHLIPAGTGLREFDNIVVYSKEEHEILEKSKSAISTK
NT seq
4269 nt
NT seq
+upstream
nt +downstream
nt
atgtcgttcagaagggaaaataaggttaaaagcaacttctcaaaaatcactattagcttg
gcatcgcccgaggaaattcttgagcgttcaagcggtgaagtgctaaagcctgaaaccatt
aactatagaacatacaaacccgagcgcgatggtcttttctgcgagcgcatatttggccct
gtaaaggattacgagtgccattgtggtaagtataagagaattagatacaaagggattgtc
tgcgacagatgtggtgttgaggttaccgaaaagaaggtacgtagggagcgcatggggcat
atcagcctagttgttcccgttgcacacatttggtattttcgttctcaacccaataaaata
ggttacctattaggtttaccagcaaagaaactggattctattatctattacgagcgttac
gtagtagttaatccgggtattaaagctgccgatggccttaataaacttgatttcttaaca
gaggaagagtatcttgatattcttgaaacacttcctaaagagaatcagtaccttgatgat
gatgatcccaataagttcattgcagctatgggggctgaggctctttataagctcctgcag
cgtattgatttagatgaactttcgtatgagttgaggcataaggcaaatactgaaacttca
caacagcgtaaaagcgaggcgttaaaacgtcttcaggttgtagaggcattccgtgaatca
aaaaatatcaataagccagaatggatgattcttaaggttattcctgtaataccacctgaa
cttcgtccattggttcctcttgatggtggccgttttgctacctccgacttaaacgatttg
tatcgtagggttattattagaaacaaccgtttaaagaggcttatcgaaataaaagctcct
gaagtaattttacgtaacgaaaaacgtatgctccaggaggctgttgattcattgttcgat
aactctcgtaagtctaacgcagttaaaaccgatgcaaatcgtccgttaaaatcgttaagc
gatagtttaaaaggtaagcaaggacgattccgtcagaacttgttaggtaaacgtgtcgac
tattctgctcgttctgtaattgtagttgggcctgaattgaacatgcacgagtgcggtttg
cctaaagatatggctgccgagctttataagccatttattattcgtaagctgattgaacgt
ggcattgtaaaaacagttaaatcggctaaaaagattgttgataggagagacccagtagtt
tgggatatccttgaaaacgtgatgaaaggtcatcccgttctgttgaaccgtgctcccaca
cttcaccgtcttggtattcaagcattccaacctcgccttattgaaggtaaggctatccag
cttcaccctctatcttgtactgcgtttaacgcagacttcgatggcgaccagatggccgtt
caccttcctcttggaaatgaggcaattttggaagcccaaatccttatgctaggttctcat
aacattcttaaccccgctaatggtgctccaattaccgttccttctcaggatatggttctt
ggcttgtactacatcactaaacctagaaagggggctaagggtgaaggaaccgttttctat
tctcctgaggaagtaattattgctcataatgagaaagcagttgatctacatgctattgta
aaagtacgtattaatacaattgacgaaaatgatcaacctgttgttaaaataattgaaacc
actgttggtcgtgtaattttcaaccagtatgtaccccagcaaatgggatacattaatgag
ctgcttactaagaaatcgctccgcgatatcattggtaaggttcttaaaaagaccaacgtt
tcaactactgccaagttcttagatgatattaagaatcttggttactacatggcctttaaa
ggaggattgtcgtttaacctcgacgatgttattatacctgaagagaaagttgagctcgtg
gaagaagggtatgctcaggttgacgaggttatggcaaactacaacatggggcttattaca
aacaacgagcgttacaaccagattattgatatttggacacacaccaatgctaagctgacc
ttaaccctaatgaagaagctttctgaggataagcaagggtttaactcaatttacatgatg
cttgactcaggggctcgtggttctaaagaacagattcgtcagctttgcggtatgcgtggt
cttatggctaagccacaaaaatctggagctactactaatgaaattatcgagaaccctatt
ctttcaaactttaaggaaggactttcggttcttgagtactttatttcaacccacggtgct
cgtaagggtcttgccgataccgctcttaaaactgccgacgctggttatctaacccgccgt
ttggttgatgtatcgcaggatgttattataaccgaaaatgactgtggtacactacgtgga
cttgtagcaactgcaatcaaaaagaacgaggacgttgttgagaccctatatgaaagaatt
ttgggtagaacaactgttcatgatgtataccatccgctaaccggtgaacttattgttgct
gctggggaagagataacagaggaaatagctcaagtaattgaagagtcacccattgagcag
gttgagatccgttccgtacttacatgtgagtctcgtaaaggagtttgtgctaaatgttac
ggacgtaaccttgcaacgggccgaatggttcaaaagggcgaagcagttggcgttattgca
gcacaaagtatcggtgagcctggtacgcagcttacacttcgtacattccacgttggtggt
actgcaggaagtattatctccgattcaaaattggtgtcgcgttatgatggccgtgcagaa
attgaagagttaaaaactgtacaacgtgaagatgaaaatggtaagtatcatgtagttatt
ggtcgtttagctgaaatacgtattgttgacctgaatactggaattactttatctaccaat
aatatcccctatggttccaaactctatatcaacaatggcgatactgttaagaaggatcaa
ttaatttgtgaatgggatccatggaatgccgtaattatatctgaagcatcaggtaaggtc
tcgtatgatgctctaattaaagaagttacttaccgtgaagagagcgacgaacaaactggg
tatcgtgaaaaggtaataattgaaacacgtgataagagtaagaaccctgctattaagata
atgtctgatggcgatgaggttattaaactctacaacctaccagtaggtgctcaccttact
gttgaagagggtgctacagtagaggctggtgatatactagctaaaattcctcgtgctgtg
ggtaaggctggcgatatcactggtggtctacctcgcgtagtggaactttttgaagctcga
aacccatcgaatccagcagttgtttctgaaattgatggtgaggtagcgtttgggaaagta
aaacgtggtaaccgggagataatcgttacctcaaagactggtgaggttaagaagtacctt
gtacctctttcaaagcaaattcttgttcaagaaaacgactatgtaagagcgggcacacct
ctttccgacggtgctatcacacctagagatattctagccatcaaaggacctacaaaggta
caagagtacattgtaaatgaggttcaggaagtttatcgtatgcagggtgtgaaaattaat
gacaagcactttgaggtaattgtgcgccaaatgatgcgtaaagttgaaatcatcgatcca
ggcgatactcgcttcctcgagggtcaacttgttgacaaatgggagttcattgaagaaaat
gataacatctttgataagaaggttattgttgagcctggtgatgctacccatttacgtcca
ggtatgattattacagcccgacagctacgcgatgagaattcaaaacttaaacggcgcgat
ttgaagcttatcgaagcacgcgatgctgttcctgctacatcgaaccaggtgctacagggt
attactcgtgctgcgcttcaaacaagtagcttcatgtctgcagcatcgttccaggaaact
actaaagtgcttaacgaagccgcaatccatggcaagattgacacgcttgagggcctcaaa
gaaaacgttatttgtggtcacctcatacctgctggaaccggacttcgtgaatttgacaat
atagtagtatattctaaagaggagcatgaaatccttgagaagtctaaaagtgctatatct
acaaaataa
DBGET
integrated database retrieval system
