KEGG   Triticum urartu (red wild einkorn wheat): 125508223
Entry
125508223         CDS       T08232                                 
Name
(RefSeq) DNA ligase 1
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
tua  Triticum urartu (red wild einkorn wheat)
Pathway
tua03030  DNA replication
tua03410  Base excision repair
tua03420  Nucleotide excision repair
tua03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:tua00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    125508223
   03410 Base excision repair
    125508223
   03420 Nucleotide excision repair
    125508223
   03430 Mismatch repair
    125508223
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:tua03032]
    125508223
   03400 DNA repair and recombination proteins [BR:tua03400]
    125508223
Enzymes [BR:tua01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     125508223
    6.5.1.6  DNA ligase (ATP or NAD+)
     125508223
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     125508223
DNA replication proteins [BR:tua03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    125508223
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     125508223
DNA repair and recombination proteins [BR:tua03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     125508223
   NER (nucleotide excision repair)
    Other NER factors
     125508223
   MMR (mismatch excision repair)
    Other MMR factors
     125508223
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase HVO_A0114 TrmB SAGA-Tad1 Presenilin
Other DBs
NCBI-GeneID: 125508223
NCBI-ProteinID: XP_048528805
LinkDB
Position
1:complement(288656594..288663716)
AA seq 893 aa
MFLPRATTSLHSLLRCQFRPLPSPKTLAITLAPPPLLLRPRRLCSSSSSSRRAPPAAAKS
GEKRPPARLKRAEAVKPLAAGGAAMSSSGGAGGKRSVADVLMGNARDAARKAKKGAPAAS
GVPSPKKPRTKTTAEADGATAEPAVDEKPPSPAKSPVKSKRPSSPPKSKSKADDAPEAKK
RSPSPTRSKTLAAAAKLEAAEKPLSPKRAKALAAKSDAKPSDQAPVSQSKDQASQSDDKK
TKISNATKSEEVNTTLELKKKGSEFDPMAAAYWKPGEPVPFLFLARALDLISNESGRIVI
TEILSNVFRTIIATTPEDLLATVYLSANRIAPPHEGIELGIGDASIIRALSEAYGRKEEH
VKKNLKELGDLGLVAKASRSSQKMMYKPKPLTISRVLDTFRTIAKESGKDSQDKKRSHIK
GLLVAATDCEPQYIIRLLQSKMRIGLAEKTVQMALGQAAVYSEKGSPPKKVQSPFEEAAK
IIKEAYSVLPIYDKIVPTLLDAGVWKLPETCNFSIGVPVGPMLAKATKSVSEIIDKFQGR
EYTCEYKYDGERAQIHCMEDGTVEIYSRNAERNTGKYPDVVDAISRIRKPTVKSFVLDCE
IVAYDREKKRILPFQILSTRARKGVTINDIKVSVCTFGFDILYINGKPLLQEQLKVRREH
LYNSFEEVPGVFQLATAITSNDLEEIQKFLDLSVNSSCEGLIIKTLDTDATYEPAKRSNN
WLKLKKDYMDSVGDSLDLVPIAAFHGRGKRTGVYGSFLLACYDEHNEEYQTICNIGTGFS
EQQLEERSTSLQSKVIKNPKAYYRFADTTDPDVWFEPSEVWEVKAADLSISPVHRAANGI
VDPNKGISLRFPRLLRVRDDKNPEHATTAEQVADMYRAQKINHSHNQEDEDDD
NT seq 2682 nt   +upstreamnt  +downstreamnt
atgttcctccctcgagccaccacctcgctccactccctgctgcgatgccagttccgcccg
ctcccctcgcctaaaaccctagccattaccctcgccccgccgcccctgctcctccgcccc
cgccgtctctgctcctcctcctcctcctcccgccgcgccccccctgccgccgccaaatcc
ggcgagaagaggccgcccgcgaggctgaagagggcggaggcggtgaagccgctagccgcg
gggggagcggccatgtcgtcctcgggaggcgccggggggaagcgctccgtggcggatgtg
ctcatggggaacgcgcgggacgccgccaggaaggccaagaagggggccccggccgcctcc
ggggtcccgtctccgaagaagcccaggacgaagacgaccgccgaggccgacggcgcgacg
gccgagccggcggtggacgagaagccgccttcgccggccaagtcgcccgtcaagtcgaag
cgcccgtcgtcgccacccaagtccaagtcgaaggccgacgacgctcctgaggcgaagaag
aggtccccgtcgcccacgaggtccaaaacgctagccgcggccgcgaaattggaggccgcg
gagaagcccctgtcgccgaagagggccaaagccctagcggccaaatctgacgccaagccc
tctgaccaagcccctgtctctcaatctaaagaccaagcgtctcaatccgatgataagaag
accaaaatctcaaatgccaccaagtcagaggaggtgaataccactctcgagctcaagaag
aaaggcagtgagtttgatcccatggctgctgcctactggaagcccggcgaacctgtgcca
ttcctgttcctggctcgggcactcgacctcatttccaacgagtctggacggattgtcatt
acagagatcctgtcaaacgtgttccgtacaattattgccacaacaccagaggatctcctt
gcgacagtatacctctcggctaaccggattgcgccacctcacgaagggattgagcttggt
attggggatgcatcaatcatccgtgcactttccgaggcatatggccggaaagaggagcat
gtcaaaaagaacctcaaggaattgggtgatttggggctcgtggcgaaagcaagcaggtca
tcacagaagatgatgtacaagccaaaaccactgacaatatcacgtgtgcttgataccttt
cggacaatcgcaaaggaatctggcaaagacagtcaagataagaaaagaagtcatatcaaa
ggacttcttgtcgctgcaacagactgtgaacctcaatacattatacgacttcttcagtcg
aagatgcgtattgggttggcagagaaaactgtccaaatggctcttgggcaagctgctgta
tattctgaaaaagggtccccgccaaaaaaagtccaatcacctttcgaagaggctgcaaaa
ataattaaagaagcatattcagttcttccaatctatgataaaattgtcccgactcttctt
gatgctggtgtttggaaacttccagaaacatgcaatttctccataggcgtccctgttggt
cctatgttggcaaaagcaacgaaatctgtctcagagattattgacaagtttcaaggtcgt
gagtacacttgtgagtacaagtatgatggtgaacgggcccagattcattgcatggaggat
ggaacagtagaaatttatagtcggaacgctgaaaggaatactgggaagtaccctgatgtt
gttgatgcaatttctagaatccgaaagcctacagttaagtcatttgtcttagattgcgaa
attgttgcttatgaccgcgaaaagaagagaattttaccctttcagatactcagcacaagg
gcccgcaagggtgttactataaatgacatcaaagtatcagtctgtacttttggctttgat
attctttacatcaatgggaaacctcttctccaggaacaacttaaagttcgccgagagcat
ctttacaactctttcgaggaagtgccaggtgtttttcaactggcaactgcaattacatca
aatgacctcgaggagatacaaaaatttcttgacttatctgtcaactccagttgtgaaggg
ttgattatcaagacattggatacggatgctacatatgagccagcgaagcggtcaaacaat
tggttgaaattgaagaaagattacatggacagtgttggagattctttagacttagtgcca
attgctgcttttcatggaagaggaaaacgaacaggtgtatatggatcgttcctcttggca
tgctatgatgagcataatgaagaataccaaacaatctgcaatataggtactggattttct
gagcaacaacttgaagagcgttctacgagccttcaaagtaaagtaataaagaacccaaag
gcatattataggttcgctgacacgactgacccagatgtgtggtttgagccgtcagaggtg
tgggaggtcaaagctgctgatttgagcataagtccagttcatcgcgctgctaatgggata
gttgatccaaataagggcatctctctaagatttcctcgtttgttgcgggtgcgtgatgat
aaaaacccagaacatgcaaccacagctgagcaagttgctgacatgtatcgtgctcaaaaa
ataaaccactcgcacaaccaagaagatgaggatgatgactga

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