Triticum urartu (red wild einkorn wheat): 125508874
Help
Entry
125508874 CDS
T08232
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG7
KO
K14409
protein SMG7
Organism
tua
Triticum urartu (red wild einkorn wheat)
Pathway
tua03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tua00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
125508874
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tua03019
]
125508874
Messenger RNA biogenesis [BR:
tua03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
125508874
mRNA cycle factors
Common to processing body (P body) and stress granule
125508874
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
TSNAXIP1_N
Motif
Other DBs
NCBI-GeneID:
125508874
NCBI-ProteinID:
XP_048529625
UniProt:
A0A8R7QDW1
LinkDB
All DBs
Position
5:332869415..332876640
Genome browser
AA seq
1033 aa
AA seq
DB search
MMTVPMDSTAVPPSRDLVQRLLKKNAELKSHLEKSAQSKVPSDPNIWLQMRENFEKMILA
DHDFCEKHEIEYILWQLHYKRIEEFRHHISSAGSAASQNGKNNANPDRIKRIKSAFRSFL
SEASGFYHDLMFKIKSNYDLPLGHFSESPENASNPGKNDKRTADAKKALISCHRCLIYLG
DLARYKGMFGDADSVRREYNAASNYYKEAASICPSSGNPHHQLAILASYSGNEVVAVYRY
FRSLAADTPFSTARDNLILAFEKNRQGYAQLPSNNKVAIARTLPPRSAGRGRGGRGEIRF
QPKDVNTEAASKEREQSIPDTLKSFFVRFVRLNGILFTRTSLETFEELFDVVINDLKVLL
SSGPNEEFHFGSDAAENALVIVRLVAILIFTVHNVKKEPDNQSYAEIVQRRVLLQNAFTA
AFEFVGHILKRCSELRDIASSFYLPAIVVYIEWLACHPELAADSEMDEKHANARSFFWNQ
CVLLMNKLILTDLASIDGDDDEACFFDMGVYEEGETGNRLALWEDFELRGFSPLVPAHII
LDFSSKHTFGSDGSTKEKKARAQRILSAGKALLNFVQIDQLRIYFDPSSRKFVVAKEPPV
FEAAISTHRSHNAPETNAVELEHEIGNFFDAVATNLGAMQSGVQLCSEGEDDEEIVFKPT
ASEKLPKVLTELPVNGYIQPLQMSTAGWPTMGRPVTIQSTASASGPGNCNVNESLPMSSG
GWAFNGRQEGISSNVSMSTTYEFVQPVEMATSSWASNGAPLVGPLNTMPTFSAAISDPRV
SAAMVPHFGSPDYSKLLLEQEKLLMMGLNNVHLAGNGFPEQRFQGGPSGLQSMVYSPHVS
VESVCNNTSLMHNQVKATEETIPSTSDSIVPSVAASGGMTINLTDAPVAVSKKNPVSRPS
RPVGPPPGFNHITPKRHDDDIMPFEKLQHQQIDDYSWLDGYQPSMERVHNSKAIYPDVAT
TSSAFTTPFPFPGKQQVSGVHTLGASEKTWQDFHLFDPAKQNMVQNHQQINQHSGQVAEK
QPAKPIGSGRYLV
NT seq
3102 nt
NT seq
+upstream
nt +downstream
nt
atgatgactgttccgatggatagtactgctgttccgccatcgcgggacctcgtgcagcgc
ctccttaagaagaatgccgaactcaaaagtcatcttgagaagtcagcacagtccaaagtc
ccatcagatcccaacatatggcttcagatgcgtgagaattttgagaaaatgattctggca
gatcatgacttctgtgaaaagcatgagatcgagtatattttgtggcagttgcactacaaa
agaatcgaggagttcaggcaccacattagttctgcaggttcagctgcatctcagaatggg
aagaacaatgccaaccctgatcgaattaagagaattaagtcggccttcaggagctttctt
tcagaagcatcgggcttctatcatgatttgatgttcaagatcaaatccaactacgacctt
cctctgggtcacttctcggagtctcctgagaatgcaagcaaccctggcaaaaatgataag
agaacagctgatgctaagaaagccctgatatcatgccaccgttgtctcatatatcttggt
gatttggcccgctataagggtatgtttggtgatgctgattctgtaagacgtgaatataat
gctgcttctaattactacaaggaggcagcttcaatctgcccttccagcggcaacccacac
catcagcttgcaatattagcttcttactctggcaatgaggtggtggctgtctacagatac
tttcgaagcttagctgcagacactcccttctccacagcacgggacaacttgattctcgct
tttgagaagaatcgccagggctatgcacagctgccaagcaacaacaaagttgcaattgct
aggacattacccccacggtcagctggtaggggcagaggaggacggggcgaaataaggttt
cagcccaaggatgttaatactgaagcagcttcaaaagagcgagagcaaagtattcctgat
acactgaagtccttctttgtacggtttgttaggctcaatggaattcttttcacaaggact
agtttggagacatttgaggaactgtttgatgtggtcatcaacgatctgaaagttctcctc
tcttctggtccaaatgaagagttccattttggttctgatgctgcagagaacgcattagtt
attgttcgacttgttgcaatccttatattcacagtgcacaacgtgaaaaaggaaccagat
aaccagtcatatgctgaaattgtccaacgcagggtacttcttcaaaatgcatttacagct
gcttttgagtttgttggacatattctcaaaaggtgctcagagcttcgtgacattgcatca
agtttctatcttccagccattgtggtctacatcgaatggctggcatgccatccggagtta
gctgctgattcggagatggacgagaagcatgcgaatgctcgatctttcttctggaaccag
tgtgtcttgcttatgaataagctcatccttacagaccttgcgtccattgatggtgatgat
gatgaggcttgcttttttgatatgggcgtgtatgaagagggtgaaactggcaatcgactt
gcattgtgggaagattttgaattaaggggattttcccccttggtgcctgcacatattatc
ttggatttctcaagcaagcacacatttggaagtgatggtagcaccaaggagaagaaagca
cgggcacaacggatactttctgcagggaaggctctactcaattttgtccagattgatcaa
ctgagaatatattttgacccatcttcaagaaagtttgttgtggccaaggagcctcctgtt
tttgaagctgccatctctactcatagatctcacaatgcacctgaaacaaatgctgttgag
ctggaacatgaaattggtaatttttttgatgcagtggcaactaatcttggagcaatgcag
tcgggagtacagttgtgttcagagggagaagatgatgaagaaattgttttcaaacctaca
gcgtctgagaagctcccaaaagtacttaccgaactacccgttaatggatatatccagcct
ctacagatgtctactgctgggtggccaacaatgggcagaccagttactattcagagtact
gcatctgcatcaggtcctggaaactgtaatgttaatgagtcacttcccatgtcttctggt
ggttgggctttcaatggcaggcaagagggtatttctagcaatgtttcaatgtcgacaact
tacgaatttgtgcagcctgttgagatggctacttccagctgggcaagtaatggtgcacca
cttgttggccctctgaacacaatgcctactttctcagctgccatctctgatccgcgtgta
tctgcagcaatggttccacattttggcagcccagattattcaaaattgctccttgaacaa
gaaaaactcttaatgatgggattaaataatgttcatttggctggaaatggatttcctgag
cagaggtttcagggtggaccgagtggattacagtcaatggtatattctccacatgtatct
gttgaatctgtgtgcaacaatacaagtttgatgcataatcaggtgaaagcgactgaagaa
accatcccatccacttctgattcaattgttccctcagtagcagcatctggtgggatgaca
atcaatctcactgatgcacctgtagctgtatcaaagaagaatcctgtaagtcgtccatca
aggcccgttggtcctcctccaggatttaaccacatcactccaaagcgccatgatgatgat
attatgccatttgagaagctgcagcaccaacagattgatgattacagctggctggatggc
taccagccatcaatggaacgtgttcataactcaaaagctatttatcctgatgttgccact
accagcagtgcattcaccactcccttccctttccctgggaaacagcaggtttctggggtg
cacaccttaggggccagtgagaaaacatggcaagatttccacctttttgaccctgcaaag
cagaatatggttcaaaaccaccaacaaattaatcagcatagtggtcaagtggctgaaaag
cagccggcaaaacctatcggatctggccgttatcttgtgtga
DBGET
integrated database retrieval system
