Triticum urartu (red wild einkorn wheat): 125511225
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Entry
125511225 CDS
T08232
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1-like
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
tua
Triticum urartu (red wild einkorn wheat)
Pathway
tua03020
RNA polymerase
tua03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tua00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
125511225
09124 Replication and repair
03420 Nucleotide excision repair
125511225
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tua03021
]
125511225
03400 DNA repair and recombination proteins [BR:
tua03400
]
125511225
Enzymes [BR:
tua01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
125511225
Transcription machinery [BR:
tua03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
125511225
DNA repair and recombination proteins [BR:
tua03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
125511225
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_3
RNA_pol_Rpb1_7
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
DUF7069
Motif
Other DBs
NCBI-GeneID:
125511225
NCBI-ProteinID:
XP_048532507
UniProt:
A0A8R7UN66
LinkDB
All DBs
Position
5:611712320..611721346
Genome browser
AA seq
1880 aa
AA seq
DB search
MDARFAHSPAEAAKVQLVQFGILSPDEIRQMSVAVIEHAETMEKGKPKPGGLSDPRLGTI
DRRTKCETCMAGMAECPGHFGHLELAKPMFHIGFIKTVLSIMRCVCFNCSKILADEDEDE
KGNNKFKQALKIKNPKNRLRKIQEACKSKKVCSAGEDDLEGQDTDEPVKKRGGCGAQQPK
ITVDGMKMVAEFKATNKKNGDQDQLPEPVERKQILSANRVLNVLKRISDEDCLLLGLDPK
YARPDWMILQVLPIPPPPVRPSVMMDTYSRSEDDLTHQLAMIIRHNENLRRQERNGAPAH
IITEFAQLLQFHIATYFDNDLPGQPRATQRSGRPIKSICSRLKAKEGRVRGNLMGKRVDF
SARTVITPDPNINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKY
IIREDGQRLDLRYLKKSSDQHLELGYKVERHLVDGDFVLFNRQPSLHKMSIMGHRIKIMP
YSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANKPVMGIV
QDTLLGCRKITKRDTLIEKDVFMNILMWWEDFDGKVPTPAILKPKPIWTGKQVFNLIIPK
QINLIRFSAWHDADAEKESGYITPSDTMVRIEKGELLSGILCKKTLGTSMGSLIHVIWEE
VGPDAARKFLGHTQWLVNYWLLQNGFSIGIGDTIADAGTMGKINDTIADAKKAVNELIKE
ARDKKLEPEPGRTMMESFENRVNHVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFI
NISQMTACVGQQNVEGKRIPFGFAGRTLPHFSQNDNGPESRGFVQNSYLRGLTPEEFFFH
AMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAV
WIEPQKLDTLGMKKAEFDNVFRYKLDDENWRPTYMSPEQADDLKTIRDIRIVFEAEIQKL
EADRLQLGTEIAATGDITWPMPVNLKRLIWNAQKTFKIDLRRPSDMHPMEIVEAMDKLQE
RLKVVPGDDAMSIEAQKNATLLFNILLRSTFASKRILKEYKLTRESFEWVIGEIESRFHQ
SLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPS
LSVFLKPEVSKKKELAKNVQCALEYTTLRSVTHATEIWYDPDPLGTTIEEDVEFVKSYYE
MPDEDIDPDKLSPWLLRIELNREMMVDKRLSMAEIAEKIRHEFDDDLSCIFNDDNADKLI
LRIRIKNDDETPKQDEDDDVFLKKVESNMLTEMALGGIADINKVFIKEKKVNRFDENDGF
TQKEEWMLDTEGVNLLAVMCHEDVDATTTRSNHLIEVIEVLGIEAVRRSLLDELRVVISF
DGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAAVYAES
DYLRGVTENIMLGQLAPIGTGGCGLYLNEEMLKQAIELQLPSYVEGLDYGYGMASAHSSI
SGTPYHDGGMMSPVLSPNFRASPVTGAQFSPYVGGMAFSPVPSNYSQSYTSGPPSYSPTS
LSYSPTSPIYSPVSPICSSASTVYSPTSPVYSPTSLSYSPTSPVYSPTSPVYSRTSLAYS
PTSPSYSPTSPLYSPTSPSYSPTLPSSYSPTSPGYSPTSPSYSPTSPNYSPTSPNYSLTS
PSYSPTSPNYCPTSPSYSPTSPNYCPTSPSYSPTSPNYCPTSPSYSPTSPNYCPTSPSYS
PTSPNYCPTSPSYSPTSPNYCPTSPSYSPTSPNYCPRSPSYSPTSPSYSPSHAYSPSSPK
MMSPYSQAPPNYSPASPTYSPTSPSYAQPSPSYSPTSPHTTSGGPSPDYSPTSPNYSPSA
SYSPSSTGPQTTDMDDETAT
NT seq
5643 nt
NT seq
+upstream
nt +downstream
nt
atggacgcgcggttcgcgcactcgccggcggaggcggccaaggtgcagctggtgcagttc
ggcatcctcagccccgacgaaatcagacaaatgtcggtggcggtgatagagcatgcagag
accatggagaaggggaagcccaagcctggtggtctgagcgaccctcgcctgggcaccatt
gaccgcagaaccaagtgcgagacatgcatggccgggatggccgagtgcccgggccacttc
ggccacctcgagctcgcaaagcccatgttccacatcggcttcatcaagaccgtgctctcc
atcatgcgctgcgtctgcttcaactgctccaagatcctcgccgacgaggatgaggatgag
aagggtaataacaagttcaagcaggctctgaaaatcaagaacccaaaaaatagattacga
aaaatacaggaggcttgcaagagcaaaaaggtttgctctgcgggtgaggatgatcttgag
ggtcaggacaccgatgagccagtgaagaaaagaggtggctgtggtgctcagcagccaaag
atcacagttgatggtatgaagatggttgcagagtttaaagcaacaaacaagaagaacggc
gatcaagatcaactccctgaaccagtggagcgaaagcaaattctctctgccaatagggtt
cttaatgttctcaagcgcataagtgatgaggattgtcttttgttgggcctggatcctaaa
tatgctcgtcctgattggatgatactgcaagtccttccaattcctccgccgcctgtgaga
ccatctgtcatgatggacacttactccagaagtgaggacgatttgactcatcaattagcg
atgataattcggcataatgagaatctgaggaggcaagagagaaatggagccccagcccac
attataacagagtttgctcagttgttgcagtttcacattgcaacatacttcgacaatgat
cttccagggcaaccaagggccactcagcgttctggaaggcctatcaagtcaatctgcagc
aggctgaaagcaaaagaaggccgggttagaggaaacttaatggggaagcgcgttgatttc
tcagctcgtaccgtcatcacaccagacccgaatatcaacattgatgaattgggggtgcca
tggagtattgctttgaatctgacatacccagaaactgttactccatataacatcgagagg
ttgaaagaactggtagaatatgggcctcaccctcccccaggtaagacaggtgccaagtac
attatcagggaagatggccagaggctggatcttcgctatctgaagaaaagtagtgatcag
catttggagctgggttacaaggtggaaaggcaccttgttgatggagattttgttcttttc
aaccggcagcccagtcttcacaaaatgtctatcatggggcatcgcatcaaaatcatgccc
tactcaactttccgcctcaacttgtctgtcacatcaccatacaatgcagattttgatggg
gatgaaatgaatatgcatgttccccagtcatttgaaaccagagctgaggttttagagttg
atgatggtgccaaagtgtattgtgtcacctcaggcgaataaacctgttatgggtattgtc
caggacacacttcttggctgtcgaaaaattaccaaaagggatactctcatcgaaaaggat
gtatttatgaacatcttaatgtggtgggaagattttgatgggaaggtccctacccctgcc
attttgaaaccaaagccgatttggacaggcaaacaagttttcaacttgattatccccaag
caaatcaatttaattagattttcagcctggcatgatgctgatgctgaaaaagaaagcgga
tatattactcccagcgatactatggtacggatagagaagggagagcttctgtctggtata
ctttgcaaaaaaacacttgggacatcaatgggaagtcttattcatgttatttgggaagag
gtagggccagatgctgcgcgcaagttcttgggtcatacacagtggctggtcaactactgg
cttctgcaaaatggtttcagtattggaatcggggatacaattgcagatgcaggtactatg
ggtaagattaatgatacaattgcagatgctaagaaggctgtgaatgagcttatcaaggaa
gcgcgtgacaagaagttggaacctgagccaggacgcacaatgatggaatcatttgaaaat
agagtgaatcatgttcttaacaaggctcgtgatgatgctggtagtagtgctcagaagagt
ttgtctgagagcaacaatttgaaagctatggttactgcaggctcaaaaggcagtttcatt
aatatttcgcagatgactgcttgcgtcggacagcagaatgttgagggcaagaggatccca
tttggatttgctggtcgtacattgccccacttctcgcaaaatgacaacggtcccgaaagc
cgtggattcgtgcagaactcttaccttcgaggcctgacaccagaggaattcttcttccat
gctatgggtggtagagaaggtttgatcgatactgctgtaaaaacttctgagactggatat
attcagcggaggctcgtgaaggccatggaggacatcatggtgaaatatgatggtaccgtg
aggaactccctgggtgatgtcattcagttcttgtatggagaagatggcatggatgctgtt
tggattgaaccgcagaaattggacaccctggggatgaaaaaggccgagtttgacaacgta
tttcgttacaaactggatgatgagaactggaggcccacttacatgtcgcctgaacaagct
gatgatttgaagaccattcgtgatatcagaattgtgtttgaggcagagattcagaaatta
gaagctgacagattacagcttgggactgaaattgccgcgactggcgacattacatggcct
atgcctgtcaacctcaagcggcttatctggaatgctcaaaagactttcaagattgatttg
agaagaccttctgacatgcacccgatggaaattgtggaagcaatggataagttgcaagaa
agactcaaggttgtcccaggagacgatgccatgagcatcgaggctcagaagaatgctact
ctgctcttcaatatcctgctccgtagcacatttgctagtaagaggatattgaaagaatac
aagctcacaagggaatctttcgaatgggtcatcggtgagatagaatcgagattccaccag
tctttggtagctcctggtgagatgattggatgcgtagctgcacagtccattggagaacca
gcaactcagatgacgctgaatactttccattatgctggtgttagcgccaagaatgtcacc
cttggtgtccccaggttaagggagatcattaacgtcgccaagaagataaagaccccgtcg
ttgtctgttttcctaaagcctgaggtgagcaagaagaaagaattggccaagaatgtccag
tgtgccttggagtacactacgctacgtagcgtgacccatgccaccgagatatggtatgat
cctgatcctctaggaaccaccattgaagaggatgtggaatttgtcaagtcatattatgaa
atgcctgatgaggatattgacccggataagctgtctccttggctgctgcgtatcgaactg
aaccgtgagatgatggtagataagaggttgagcatggctgaaattgcagagaagatcaga
catgaatttgatgatgacttgtcatgcatattcaatgatgataacgcggataagctcatt
cttcgtatccgcattaaaaatgatgatgaaactccaaaacaggatgaggatgatgatgtc
ttcctcaagaaggttgagagtaacatgttgactgagatggcccttggaggcattgcagat
attaacaaggtcttcatcaaagagaagaaggtgaatagatttgatgaaaatgatggtttc
actcaaaaagaagagtggatgcttgatacagaaggtgtaaacctcttggcagtgatgtgc
cacgaggatgttgacgctacaacgacaaggagtaaccatctgatcgaagtgattgaggtt
cttgggatcgaggctgtccgcaggtctctcttggatgagctgagggtggtgatatctttt
gatgggtcctatgtgaactacaggcatctggccattctctgcgataccatgacatacaga
ggtcacctgatggctattactaggcacggtatcaatcgtaatgacacaggacctctcatg
agatgttcttttgaagaaacagtggatatcttgcttgatgctgctgtgtatgcggagtct
gattacctgagaggtgtcaccgagaacattatgcttggccagctcgctcctattggtaca
ggaggctgtggattgtatctgaatgaggagatgctgaagcaggccattgagcttcaactc
ccgagctatgttgaaggtctggactatggctatggcatggcatcagcgcattcatccatc
tccgggacaccgtaccatgatggaggaatgatgtcgccagtgctgagtccaaatttccgg
gcttcccccgttacaggtgctcagttctcgccatatgttgggggcatggcattctctccc
gtcccatcaaactacagccaatcctatacgtctggccctccttcctacagtccgaccagt
ctatcatactcgccaacatcgccaatctatagtccggtatcgccgatctgtagttcggca
tcgacagtttatagtccaacatccccagtttatagcccgacatccctttcatatagccca
acatcgccagtttatagtccaacatcgccagtttatagccggacatctcttgcatacagc
cccacgtcaccatcctatagtccaacatcgccactctatagcccaacatcaccatcatac
agtcctacattgccctcatcatacagccctacgtcgcctggttacagcccgacgtcaccg
agctacagcccgacatcaccgaactacagccctacgtcaccgaactacagcctgacatca
ccgagctacagccctacttcaccgaactactgcccgacgtcaccgagctacagccctact
tcaccgaactactgcccgacgtcaccgagctacagccctacttcaccgaactactgcccg
acgtcaccgagctacagccctacttcaccgaactactgcccgacgtcaccgagctacagc
cctacttcaccaaactactgcccgacgtcaccgagctacagccctacttcaccgaactac
tgcccgacgtcaccgagctacagccctacctcaccgaactactgcccgaggtcaccgagc
tacagccctacgtcaccttcgtacagtccttcacatgcttattctccaagcagcccaaag
atgatgagcccatacagtcaagctcctccaaactacagccctgcctcgccgacttactcg
cccacctcaccatcatatgcacaaccaagcccatcgtacagcccgacaagcccgcacact
acctctggaggacctagcccagattacagcccaacttcccccaactacagccccagcgca
agctactccccatcatccaccgggccgcaaactactgacatggatgacgagactgctact
tga
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integrated database retrieval system
