Triticum urartu (red wild einkorn wheat): 125512456
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Entry
125512456 CDS
T08232
Name
(RefSeq) protein CLP1 homolog
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
tua
Triticum urartu (red wild einkorn wheat)
Pathway
tua03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tua00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
125512456
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tua03019
]
125512456
Enzymes [BR:
tua01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
125512456
Messenger RNA biogenesis [BR:
tua03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
125512456
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CLP1_P
Clp1
CLP1_N
nSTAND3
ATP_bind_1
AAA_22
ABC_tran
CbiA
SRPRB
AAA_10
AAA_29
MMR_HSR1
AAA_24
GTP_EFTU
Motif
Other DBs
NCBI-GeneID:
125512456
NCBI-ProteinID:
XP_048533505
UniProt:
A0A8R7UVB3
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All DBs
Position
6:complement(207753876..207758650)
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AA seq
438 aa
AA seq
DB search
MAATGAAAPAPAAVQPLRQFKLDPQSELRVEVLPDATLRVRLVSGTAEIFGTELPPEGWL
TIPPRSKIAIFTWHGATVELDGVSESEYTSDETPMVIYVNTHAILDARRARARAAQGGDL
EASQGPRVIVVGPTDSGKSTLCKMLLSWAAKLGWKPTYVDLDIGQGSITIPGCISATPIE
KPIDIVDGIPLEMPLAYFYGHPNPSINPDVYKALMRELAQTLETQFSGNAESRAAGMVIN
TMGWVEGLGYELLLNAIEIFKANVVLVLGQEKLWKMLKDAVQSKPNIDVVKLHKSEGVVL
RNSKYRQKTRSFRIKEYFYGIANDLAPHSNVVNFSDVSVFRIGSGHQAPRSALPIGAEPV
ADPTRLVAVNISTDMVHTVLAVSYAKEPDEIISSNVAGFIHVTDVDIQRKKLTYIAPCPG
DLPSRLLIASSLTWYEQA
NT seq
1317 nt
NT seq
+upstream
nt +downstream
nt
atggccgccaccggcgctgccgcgcccgcgcccgcggccgtgcagccgctgcggcagttc
aagctcgacccgcagagcgagctccgcgtggaggtgctcccggacgcgaccctccgcgtg
cgcctcgtctccggcacggcggagatcttcggcaccgagctcccccccgagggctggctc
accatcccgccccgctccaagatcgccattttcacgtggcacggcgcgacggtggagctg
gacggggtcagcgagagcgagtacacgtccgacgagacgccgatggtgatttatgtgaac
acacatgcgattctcgacgcacggagggcgagggcgagggcagcgcagggaggcgacttg
gaggcctcacagggacctagagtgattgttgtggggccaactgattctggaaaaagcact
ctgtgcaaaatgctccttagctgggctgccaaactgggatggaagcctacatatgtggat
ttagatattggccagggttcgataaccatacctggatgtatttctgctacaccaattgag
aagcctatcgatatagttgatgggattcctttggagatgccgcttgcatacttttatggc
catccaaatccaagtattaatccagatgtttacaaagcactcatgagagagctagctcaa
acattagagacacagttctctgggaatgctgaatctagggcggctggtatggttattaac
acaatggggtgggttgaaggccttggctatgagttacttcttaatgcaattgaaatcttc
aaggctaatgtagtgctggtattgggacaggagaagttatggaagatgttaaaagatgca
gtacaaagtaagcccaatatcgatgtcgtaaaacttcataaatcggagggtgttgtccta
aggaattcaaaatatcgtcaaaagactaggagctttcgtatcaaggagtacttttacggg
attgcaaacgatctggcaccacattcaaatgtagtcaacttcagtgacgtttctgttttc
agaattggtagtggacatcaagctccacggtcagctttaccaattggtgcagagcctgtg
gcagatcctactcggcttgttgctgtcaacatcagcactgatatggtccacacagtgctt
gctgtttcttatgcgaaggaacctgatgaaataatttcgagcaacgttgcgggattcatc
catgtcacagatgttgacatccaaaggaagaagctgacgtacatcgcgccttgcccagga
gacctgccaagcaggctgttaatcgctagctccctgacatggtacgagcaggcttga
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