Triticum urartu (red wild einkorn wheat): 125516258
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Entry
125516258 CDS
T08232
Name
(RefSeq) carbon catabolite repressor protein 4 homolog 4
KO
K12603
CCR4-NOT transcription complex subunit 6 [EC:
3.1.13.4
]
Organism
tua
Triticum urartu (red wild einkorn wheat)
Pathway
tua03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tua00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
125516258
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tua03019
]
125516258
Enzymes [BR:
tua01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
125516258
Messenger RNA biogenesis [BR:
tua03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
125516258
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
125516258
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exo_endo_phos
Motif
Other DBs
NCBI-GeneID:
125516258
NCBI-ProteinID:
XP_048537701
UniProt:
A0A8R7K0V4
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Position
1:complement(429214905..429222102)
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AA seq
398 aa
AA seq
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MLLKPQAIWAASLPLFLGRRLLPKSSSSPPPSGRRLPFRPICKRRMSAQAEPRFAPLPTA
QSEPDAGADGYQFRLVSYNILAQVYVKSAFFPHSPSASLKWKARSKAVLTELKSFNADLM
CIQELDEYETFYRKNMESTGYSSIYVQRSGDKRDGCGIFYKPKSVELLQKEVIHYNDLVE
TCHLNDNVISAPSNNSSPSEESSGKEDNKKRGDPNDPRVRLKRDCVGLLAAFKLGDPCEH
ILIVANTHIYWDPEWIDVKLAQAKYLLSKVSEFEKIIANKFTCKPSVIIAGDFNSTPGDK
VYNYLVSAGSESTDEALIKLRSLYAENGGEPEFTNCTPGFTGTLDYIFLSEGGSIKPTSL
LRIPRGGSPDVEGGLPNFHHPSDHLPIGADFQVLRASA
NT seq
1197 nt
NT seq
+upstream
nt +downstream
nt
atgctcctaaaaccccaggcaatctgggcggcttccctccctctcttcctcggccgccgc
ctcctccccaaatccagttcctctccccctccctccggccgccgcctccccttccgcccg
atttgcaagcggcggatgagcgcgcaggcggagcccagattcgcccctctccccacagcg
cagtccgagcctgatgccggggcagacgggtaccagtttcggctggtttcctacaacata
ctcgcccaggtttatgtgaagagcgcattttttccccattctccatccgcgtctcttaag
tggaaagctcgttcaaaagccgttctaacagaactcaagagttttaatgccgacctcatg
tgcatacaggagttggatgaatatgagacattctatagaaaaaacatggaaagtactgga
tattcaagtatttatgtccagcgatctggagacaaacgggatggatgtggtatattttat
aaaccaaaaagtgtggaactgttacagaaggaagtaatacattacaatgacttggtggaa
acatgtcatcttaatgataatgtaattagtgccccctcgaataattcttcaccatcagaa
gaatctagtggaaaggaagataataagaaacgtggagatccaaatgatccacgtgtgaga
ttgaagcgtgactgcgttggtttacttgctgctttcaagcttggcgatccttgtgagcat
atcctgattgtggcgaacacacatatttattgggatccagaatggattgatgtgaagttg
gctcaagcaaagtatcttctttcaaaagtctctgagtttgagaaaattatcgcaaataag
ttcacctgtaaaccttctgtgatcattgctggtgattttaactccacccctggtgataag
gtatacaattaccttgtatcagctggctccgaatctacggacgaagccctgatcaaattg
cgcagcctgtatgctgagaacggaggggagccggagttcacaaattgcactccaggtttt
actggaacattggactacatattcctgtcggaaggcggttcaataaaacctaccagctta
cttcggatcccacgagggggttccccggatgtggaaggaggcctgcccaacttccaccat
cctagtgatcacttgccaatcggtgccgattttcaggtacttagagctagtgcctag
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