Triticum urartu (red wild einkorn wheat): 125516280
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Entry
125516280 CDS
T08232
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH1-like
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
tua
Triticum urartu (red wild einkorn wheat)
Pathway
tua03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tua00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
125516280
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tua03041
]
125516280
Enzymes [BR:
tua01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
125516280
Spliceosome [BR:
tua03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
125516280
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Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
WHD_HA2
HA2_C
DEAD
AAA_22
AAA_30
AAA_19
SRP54
nSTAND3
T2SSE
nSTAND_NTPase5
Flavi_DEAD
AAA_16
ABC_tran
PhoH
Motif
Other DBs
NCBI-GeneID:
125516280
NCBI-ProteinID:
XP_048537716
LinkDB
All DBs
Position
1:430066706..430070162
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AA seq
1060 aa
AA seq
DB search
MASEEGQLKTRVSDRLMALVGYSEVMVVRLVLRLARDSASPADLAARLVDLAGLPSSADT
VAFAEDVHAMFPRKGSRVSEYRKQVQEAAAFARKQSALKLLDDEDDVAKDAGATATASSS
NNSGRKRFRQKAASQGDDDGEEEASVVRDSGRKVRARRGPAEDGGDSGGEELQEMDRDQI
EKAQLDRHIRERDAASTRKLKDRKPSKREQGELARRSEAMDRGDTSELRTASRHAYLEKR
KKMKVEEMRDEIIDNELIFDGVKMTNAEEEEFRRRKEIYELVKDRVGKDADAGDYYRMPE
AYDAAENVDQAKRFAVPRQRYHDPEASAARDGKRSSFFSEQEAWEEQQIRKSRLHFGSGD
GGRAGGGYELVLEDVVDFVKSTVQSGAEPDGEMDELAEAVDAKVKLQRELQDERKNLPVY
KFKDDLLKAIEKYQVLIIVGETGSGKTTQIPQYLHEAGYTAKGKKIACTQPRRVAAMSVA
ARVAQELGVKLGHEVGYSIRFEDCTSDKTVIKYMTDGMLLREFLGEPDLASYSVVIVDEA
HERTLSTDVLFGLVKDIARFRPDVKLLISSATLNAERFSDFFDEAPIFKIPGRRYKVDIH
YTTAPEADYIAAAVVTVLQLHVKQPAGDILLFLTGQEEIETVEELLKQKMRTVGSKIAEL
VICPIYANLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPGFCKLKSYNP
RTGMESLRVEPISKASADQRAGRSGRTGPGKCFRLFTEYNFRHDLDDDTVPEIQRSNLAN
VVLRLKALGINDLVGFDFMDPPASEALLKALEELFALGALNSRGELTKTGRRMAEFPLDP
MLSKAIVASEKYGCSEEVVTIAAMLSAGNAVFYRPKDKLVLADTARQAFHAGNVGDHVAL
LNVYSAWRESGYSSQWCRENFVQPRTMKRARDVRDQLEALLERVEIEHCSGAGDLDGIRK
AVTAGYFRNAARRQKDGSYRAVKSRQTVFVHPSSGMADVPPAWVVYHELVLTSKEYMRQV
TELKPEWLLEIAPHYYQRKDIDGHQPKKTGKDKGPAARQT
NT seq
3183 nt
NT seq
+upstream
nt +downstream
nt
atggccagcgaggagggccagctcaagacgcgggtgtccgaccgtctgatggcgctcgtg
ggctactccgaggtcatggtggtgcgtctggtgctccgcctcgcgcgggacagcgcctcg
ccggccgacctcgcggcgcgcctcgtcgacctcgccggcctcccctcctccgccgacacc
gtcgccttcgcggaggacgtgcacgccatgttcccccgcaagggctcccgcgtcagcgag
taccggaagcaggtgcaggaggcggcggcgttcgccaggaagcagagcgccctcaagctg
ctcgacgatgaggacgatgtcgccaaagacgccggcgccaccgccaccgcgtcgtcctct
aacaacagcggcaggaagcgtttcaggcagaaggccgcgagccaaggggatgacgacggc
gaggaggaggcgagtgtagtgcgcgattcagggcggaaagtgcgagcgcggcgtggaccg
gcggaagacggcggcgactctggtggggaggaactacaggagatggaccgtgaccagatc
gagaaggctcagctcgaccggcacatcagagaacgcgacgcggccagcactaggaaactg
aaggaccggaagccgtccaagcgagaacagggcgagctcgcccggcggtccgaagccatg
gacaggggcgacacctcggagctcaggacggcctcgcggcacgcgtacctggagaagcgg
aagaagatgaaggtggaggagatgcgagacgagatcatcgacaacgagctcatcttcgac
ggcgtcaagatgaccaacgccgaagaggaggaattcaggcgcaggaaggaaatctacgag
cttgtcaaggaccgcgtcggaaaggacgccgacgccggcgactactacaggatgccagag
gcatacgacgccgcagaaaacgtggatcaggccaagcggttcgccgttccgaggcagcgg
taccatgaccccgaggcgtcggcggcgagagacggcaagaggagcagtttcttctcggag
caggaggcctgggaagagcagcagataaggaagtctcggctgcactttggatcaggtgat
ggtggccgggccggcggcggctacgagctcgtcttggaagacgtggtcgacttcgtcaag
tcgacggtgcagtccggcgccgagccggacggcgagatggacgaactggccgaggccgtc
gacgccaaggtcaagttacagcgggagctgcaggacgagcggaagaacctacccgtgtac
aagttcaaggacgatctgctcaaggccatcgagaagtaccaggtgctgatcatcgtcgga
gagaccggctccggcaagaccacgcagataccgcagtacctccacgaggctgggtacacg
gccaaggggaagaagatcgcgtgcacgcagccgcggcgcgtggcggccatgagcgtggcg
gcgagggtggcgcaggagctgggcgtcaagctcgggcacgaggtcggctactccatcagg
ttcgaggactgcacctcggacaagacggtgatcaagtacatgacggacgggatgctcctg
cgcgagttcctcggcgagccggacctggcgagctacagcgtggtgatcgtggacgaggcg
cacgagcgcacgctctccaccgacgtcctcttcggcctggtaaaggacatcgcgcgcttc
cggccggacgtgaagctgctcatctccagcgcgacgctcaacgccgagaggttcagcgac
ttcttcgacgaggcccccatcttcaagatccccgggaggcggtacaaggtggacatccac
tacaccacggcgccggaggcggactacatcgccgccgccgtcgtcacggtcctgcagctg
cacgtcaagcagcccgccggcgacatcctgctgttcctcacggggcaggaggagatcgag
acggtggaagagctgctgaagcagaagatgaggacggtcggcagcaagattgcggagctg
gtgatctgcccgatctacgcgaacctgcccaccgagctccaggccaagatcttcgagccg
acgccggagggcgcccgcaaggtggttctggcgaccaacatcgccgagacgtcgctgacc
atcgacgggatcaagtacgtgatcgacccgggcttctgcaagctcaagtcgtacaacccg
cgcacgggcatggagtcgctgcgcgtggagcccatctccaaggcgtcggcggaccagcgc
gccggccggtcggggcgcacgggcccgggcaagtgcttccgcctcttcacggagtacaac
ttcaggcatgacctggacgacgacacggtcccggagatccagaggagcaacctggccaac
gtggtgctgcggctcaaggcgctgggcatcaacgacctggtgggcttcgacttcatggac
ccgccggcgtcggaggcgctgctcaaggccctggaggagctcttcgccctcggcgcgctc
aacagccgcggcgagctcaccaagaccgggaggcggatggcggagttccccctggacccc
atgctctccaaggccatcgtggcgtcggagaagtacgggtgctccgaggaggtggtgacc
atcgcggccatgctgtcggccggcaacgccgtcttctaccggcccaaggacaagctggtg
ctcgccgacacggcgcggcaggccttccacgcgggcaacgtcggcgaccatgtggcgctg
ctcaacgtgtacagcgcgtggagggagtcgggctactcgtcgcagtggtgccgcgagaac
ttcgtgcagccgcgcaccatgaagcgcgcgcgggacgtgcgggaccagctggaggcgctg
ctggagcgggtggagatcgagcactgctccggcgccggcgacctcgacgggataaggaag
gcggtcacggcgggatacttccgcaacgccgcgcggcggcagaaggacgggtcgtaccgt
gccgtcaagagccggcagacggtgttcgtgcacccgagctccgggatggcggatgtgccg
ccggcgtgggtggtgtaccacgagctggtgctgaccagcaaggagtacatgcggcaggtg
acggagctcaagccggagtggctgctggagatcgcgccgcactattaccagcgcaaggac
atcgacgggcaccagccgaagaagacgggcaaggacaaaggtccagcggcgaggcaaacc
tga
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