Triticum urartu (red wild einkorn wheat): 125521104
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Entry
125521104 CDS
T08232
Name
(RefSeq) polyadenylate-binding protein 2-like
KO
K13126
polyadenylate-binding protein
Organism
tua
Triticum urartu (red wild einkorn wheat)
Pathway
tua03015
mRNA surveillance pathway
tua03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tua00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
125521104
09123 Folding, sorting and degradation
03018 RNA degradation
125521104
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tua03019
]
125521104
03041 Spliceosome [BR:
tua03041
]
125521104
Messenger RNA biogenesis [BR:
tua03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
125521104
mRNA cycle factors
Stress granule specific factors
125521104
Spliceosome [BR:
tua03041
]
Complex C
Other components
Complex C specific factors
125521104
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_10
RRM_5
RRM_occluded
RBD_DEAH11
RRM_Nup35
RRM_7
RRM_3
SET_assoc
YflT
BRAP2
NSRP1_N
Motif
Other DBs
NCBI-GeneID:
125521104
NCBI-ProteinID:
XP_048542110
UniProt:
A0A8R7V2B4
LinkDB
All DBs
Position
7:388557419..388566422
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AA seq
663 aa
AA seq
DB search
MMAAQVQASAAPAAGATEGGASPAAGAAAAAAPATAAAFPATSLYVGDLDVSVQDAQLFD
VFSQVGSVVSVRVCRDVNTRMSLGYAYVNFSSPADAARALEMLNFTPVNGKPIRIMYSNR
DPSSRKSGAANIFIKNLDKSIDNKALYDTFSAFGNILSCKVATEISGESKGYGFVQYEQD
ESAQNAINELNGMLLNDKKVYVGPFVRKQERENVFGSPKFNNVYVKNLSESTTEDNLREL
FGNFGPITSVIVVRADDGKSRCFGFVNFENPDDAARAVEDLNGKKFDDKELYVGRAQKKS
EREMQLKENFEKSNKETADRNQGTNLYLKNLDSSVDDDEKLKELFAEFGTITSCKVMRDS
NGVNKGSGFVAFKSSEDASRALVAMNGKMVGGKPLYVALAQRKEERRARLQAQFSQMRPV
MPPPVAPRMPMYPPGVSGMGQQLFYGQPPPAFVNPQPGFGFQQHMIPGMRPGVAPMPNFV
MPMVQQGQQPQRPSGRRAGAGGMQQPMPMGHQQMVPRGGRGGYRYASGRGMPDAAFRGVG
AMGPSLYEMGRMTPGDTGAPQQVSSGALASALANSPPEQQRLMLGESLYPLVDQLEHDQA
AKVTGMLLEMDQTEVLHLIESPDALKSKVAEAMEVLRSAQQQQTNVPADQLAALSLSDGF
VAS
NT seq
1992 nt
NT seq
+upstream
nt +downstream
nt
atgatggcggcgcaggttcaggcgtcggcagcgccagcggctggcgcgacggagggcggc
gcgtctccggcggctggggctgcggcagcagccgcaccagcaactgctgcggctttcccg
gcgacttccctgtacgtgggggatctggacgtgagtgtgcaggacgcgcagctctttgac
gtcttcagccaggtcggctcggtggtgtctgtgcgcgtgtgccgggacgtcaacaccagg
atgtccctaggctacgcgtacgtcaacttcagcagccctgccgatgctgcaagggcattg
gaaatgctgaacttcactcctgttaatgggaagcctataaggataatgtattctaaccgt
gaccccagctcacgtaaaagtggtgctgcaaatatatttatcaagaatcttgacaagtca
atagataacaaagcgctctatgacacattttctgcctttggaaacattctttcatgcaaa
gttgctacagaaatatctggagaatccaagggttatggttttgttcagtatgagcaggac
gaatcagcacagaatgccatcaatgagctcaatgggatgcttttgaatgacaaaaaggtt
tatgttgggccttttgttcgtaaacaggaaagggaaaatgtttttggcagtcccaagttc
aataatgtctatgtaaagaatctatcagaatctaccaccgaagataatctgagagaattg
tttggtaattttggacctataactagtgttattgtagtgcgagccgatgatggtaaatcc
agatgctttggattcgtgaactttgaaaatccggatgatgctgcacgtgctgttgaggat
ttgaatggcaagaaatttgatgataaggaattatatgttggtagagctcagaagaagtct
gaaagggagatgcaattgaaggaaaattttgagaaaagcaataaagagacagctgacagg
aaccaaggcactaacttgtatttgaaaaacttggatagtagtgttgatgacgatgagaaa
ttaaaagaactttttgctgaatttggcactataacttcttgcaaggttatgcgggattcg
aatggggtcaacaaaggatctggttttgttgcatttaaatcttccgaagatgcttcacga
gctcttgtggcaatgaatggtaaaatggttggcggtaagcctctttacgtagcacttgcg
caacgcaaggaagaaagaagagccaggctgcaggcgcagttttcacaaatgcgtcctgtg
atgccaccgcccgttgctccgcgcatgcccatgtacccccctggtgtttctggaatgggc
caacagctattctatggccaaccacctccagcttttgttaacccacagcctggatttggt
ttccagcaacatatgattcctggaatgagacctggtgttgctccaatgccaaatttcgtc
atgccaatggtgcagcaaggtcagcaaccacaacgcccatctggaaggcgcgcaggtgct
ggtggaatgcaacagccaatgccaatgggtcatcagcagatggttccgaggggtggccgt
ggtggttaccgttatgcgtctggccgtggcatgcctgatgctgcattccgtggtgttgga
gctatggggccatcgctgtatgagatgggaaggatgactcctggtgacactggagcaccg
cagcaagtttctagtggagcattagcatctgcacttgctaactctccgccggagcagcaa
cgattgatgcttggtgaaagcttgtatccacttgttgatcagctggagcatgaccaggct
gccaaggttaccggtatgcttctggagatggaccagactgaggttcttcatctaattgag
tcacctgatgctctgaagtctaaggtcgctgaagctatggaggttctccgcagtgctcag
cagcagcagaccaatgttccagctgatcagctggctgctctttcgctgagcgatggcttt
gttgcttcttag
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