Triticum urartu (red wild einkorn wheat): 125521837
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Entry
125521837 CDS
T08232
Name
(RefSeq) probable NOT transcription complex subunit VIP2 isoform X1
KO
K12605
CCR4-NOT transcription complex subunit 2
Organism
tua
Triticum urartu (red wild einkorn wheat)
Pathway
tua03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tua00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
125521837
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tua03019
]
125521837
Messenger RNA biogenesis [BR:
tua03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
125521837
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
125521837
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
125521837
NCBI-ProteinID:
XP_048542858
UniProt:
A0A8R7K241
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Position
1:493883620..493892110
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AA seq
612 aa
AA seq
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MSGSLNSNIGGDSTGRPFTSTFSGQSGSFPNFHHSGLHNIHGNLNLASLSPRNASLSGIP
SPGVQQPGGNISGSRFPSNNLPVSMSQISHGHSGISNRGGMNVGGNAVFSSSMNAIGGSA
QGLSSSMANVGNRNSAPGLTASSVLGNLGPRITNSAGNIVGGSSIGRSISSAGMSMPGIA
SRINSSGNSGSGALNIPSNRLSSMHQASPQFMNILGSSYPAPGGTLSQNQVQAGNNSFSS
SGMLHDGNSGDNSPFDINDFPQLTGRPNSAGGGQGQYGSLRKQGVSVNAIVQQNQEFSIQ
NEDFPALPGYKGNSSDYGMDLHHKDHLHENANIMQGQHFPMGRSSGFNLGGSYPARQQQQ
QSTTSVQNGLDNIGLRPINSPSPSSNSGSYEQLIQQYHQPQTQNSLRSQTSSGQQSSKDQ
SQKSAQGKETVPDPYSLLGLLNLIKSKEPGPTALALGLDLTTLGLNLNSPDCLWKTFGSP
WSNEPAKGEPDYQIPACYSAEQPPPLQPFNFPKFHPLTLFYIFYSMPKDVAQLYAANELY
NKGWFYHREYRVWLTRASNVAPLVKTPLYERGSYICFDPSLWDTIQKDNFVLQYESVEKR
PVLPSASQNVRL
NT seq
1839 nt
NT seq
+upstream
nt +downstream
nt
atgtcaggatcactgaattcaaatattggtggggattcaacaggaaggccattcacatca
accttttctggtcagtctggatcatttcctaatttccatcactctggcttgcataatatc
cacggaaatctcaatcttgcatcactatcgccaaggaatgcttcattgtcaggtattcca
tccccaggtgttcaacaacctgggggcaatatttctggtagccggtttccctcaaataac
cttccagtgtccatgtctcagatttctcatggccattctgggatcagcaacagaggaggt
atgaatgttggggggaatgctgtatttagtagtagcatgaatgctattggtggttcagca
caaggtttatcctcaagcatggctaatgttggtaatcgaaattctgctcctgggttgaca
gcttcttcagttttggggaacttaggcccacggataacaaattctgcgggcaatatagtg
ggtggcagcagtattggcagaagcataagctcagcaggaatgtccatgcctggtattgca
tcccgtatcaattcgagcggcaactctggaagtggggctcttaatatcccatccaatcga
ctgagtagtatgcatcaagcgtcaccacagttcatgaacattcttgggagttcttatcca
gcacctggaggaacgctatctcagaaccaagttcaggcaggaaacaattcttttagttct
tcaggaatgctacatgatggaaactctggtgacaattctccgtttgacataaatgatttt
ccccagttaactgggcgtcctaattctgctggaggtggtcaagggcaatatgggtcactg
cgaaaacaaggagtaagtgtaaatgccattgtgcaacaaaaccaggagttcagcattcag
aatgaagattttccagctttaccaggatataaaggcaattcgtcagattatggtatggat
ttgcatcacaaggaccaccttcatgagaatgcaaatattatgcagggacaacattttcct
atgggtagatcatctggctttaatttgggaggtagctatccagcccgccaacaacagcag
cagagcactacttcggttcaaaatggtcttgataatattgggctaaggccgataaattct
ccaagtccgtcttctaattcggggtcttacgagcaactcatccagcaataccatcaaccg
cagactcagaattcacttaggtcgcagacgtcttcgggccaacagtcatctaaggatcag
agtcaaaagtctgctcagggaaaagaaactgtgccagacccatatagtttacttggattg
ttgaacttaataaaatcaaaagagcctggaccaacagctcttgctttagggcttgattta
actacactagggctgaatttgaactctccagattgtctttggaagacatttggctctcca
tggtcaaacgagccagctaaaggagaacctgattatcagatccctgcttgttattctgct
gagcaacctccaccactgcagccattcaattttccaaagtttcaccccttgacgctattc
tacatcttctacagtatgccgaaggatgttgctcagttatatgccgcgaatgaactatat
aacaaagggtggttttaccacagagagtatcgtgtgtggctcacacgagcttcaaatgtg
gcgcctcttgtgaaaacaccactgtatgaacgaggatcctacatttgttttgatcccagc
ctgtgggatacaattcagaaggacaactttgtgctccaatatgaatctgtagagaagaga
cctgtcctcccttccgccagccaaaatgttagattataa
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