Triticum urartu (red wild einkorn wheat): 125523661
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Entry
125523661 CDS
T08232
Name
(RefSeq) LOW QUALITY PROTEIN: pre-mRNA-splicing factor syf1 homolog
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
tua
Triticum urartu (red wild einkorn wheat)
Pathway
tua03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tua00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
125523661
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tua03019
]
125523661
03041 Spliceosome [BR:
tua03041
]
125523661
Messenger RNA biogenesis [BR:
tua03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
125523661
Spliceosome [BR:
tua03041
]
Complex B
Other components
Prp19-related factors
125523661
Complex C
125523661
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
TPR_14
HAT_PRP39_C
Mad3_BUB1_I
PPR
TPR_16
Suf
TPR_12
ARM_TT21_C
ARM_TT21
Motif
Other DBs
NCBI-GeneID:
125523661
NCBI-ProteinID:
XP_048544671
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All DBs
Position
7:complement(148492960..148501176)
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AA seq
785 aa
AA seq
DB search
MEIEVSADDVAYEEDVLRDPFSLSGWLRYLSARRAAPPAKRAAIYERALRALPGSYKLWH
AYLTELGDAARALPVTHAAHAGLDAAFERALAAGMSRMPRVWHMYASSLLHQRLLTRARR
VLDRALRSLPVTQHHRVWPLHLRLASLPDCPAPTALRVHGRHLQFNPDHAEQFIAFHHLV
SAGRWRDAAHHLAAAIDDEGFVFVKGTTKRQLLLDLCGLLAQHPEDVAGMPVDAILRGSI
RKFPEEAGVLWTCLASHYARRGLHGKARDMFEEATTTATTVKDFRMVFDAYLHFEHAMAA
AELELGQADTVDVQDCWLADRDSTDLAMARLERLLERRPELLNSVLLTQNPHDVXAWHER
AKIFHKDPARQAATYVEAVKAVDPAKATGKPPHTLWLALASMYEDRGTVDCARDVLHRAT
QANFTAAEHLAAVYCEWAHMELRHQDPDRAIDLIRRATTPPSTEAMTRAAAAGGEDVRAK
LHRCLKLWLVYLDLMTTHGSLESTCAVYDKMHDLGVVTPLLVLDHATLDYSTATLLEQHG
RFEDAFCVYERGVRSFKHPHADAIWEAYLTKSVQRHGRSRPERVRDLFQAAALQAPPERK
KAVYLRYPRFEEDFGLASRAMKVYEEATGAVPTGDRLGVYGVYVARATELYGLLKARDVY
GQAIVGGGLPDEGARAMCVGFADIEIGLGEVARARALYAYAAAFTDPGVCHDFWKRWNDF
EVRHGDEGTFREMLRAKRTMAAVARDGAGARCATGTGGGVVEQGLCPCAGQRLDVARQSK
RIRLV
NT seq
2358 nt
NT seq
+upstream
nt +downstream
nt
atggagatcgaggtctcggcggacgacgtcgcgtacgaggaggacgtcctgcgggatccc
ttcagcctgtccggctggctgcgctacctgtcggcccgccgcgcggcgccgccggcgaag
cgcgcggccatctacgagcgggcgctgcgggccctccccgggtcctacaagctctggcac
gcctacctcacggagctcggcgacgccgcgcgcgcgctgcccgtcacccacgccgcccac
gccggcctcgacgccgccttcgagcgcgcgctcgccgccggcatgtcccggatgccgcgc
gtctggcacatgtacgcctcctcgctcctccaccagcgcctcctcacccgcgcccgccgc
gtgctcgaccgcgccctgcggtcgctgcccgtcacgcagcaccaccgcgtgtggccgctc
cacctccgcctcgcctccctgcccgactgcccagccccgaccgccctccgcgtgcatggc
cgccacctccagttcaaccccgaccacgccgagcagttcatcgccttccaccacctcgtc
tctgccggcagatggcgggacgccgcccaccacctcgcggcggccatcgacgacgaaggc
ttcgtgttcgtcaagggcacaacgaagcgccagctcctgcttgacctgtgtggcctgctc
gcccagcacccggaggacgtcgccggtatgccggtggacgcaatcctccgcggcagcatc
cgcaagttccccgaggaggccggcgtgctgtggacatgtctggccagccactacgcgcgg
agaggcctccatggcaaggcgagggacatgttcgaggaggccacaaccaccgcgaccacc
gtcaaggacttccggatggtgttcgacgcttacttgcacttcgagcacgccatggccgcc
gcggagctcgagctcgggcaagcggacaccgtcgacgtccaggactgctggctcgcggac
cgggacagcacagacttggcgatggcgaggctggagcggctgctcgaacgccggccggag
ctgctcaacagcgtgctgctgacgcagaacccgcacgacgtctaggcgtggcacgagcgg
gccaagatcttccacaaggatcccgcgaggcaggccgcgacctacgtggaggccgtcaag
gccgtggatccggcgaaggcgacggggaagccgccgcacacgctctggctggcgctggcc
agcatgtacgaggaccgtggcaccgtcgactgcgcccgagacgtgctccacagagccacg
caggcgaacttcacggcggcggagcacctcgccgcggtttactgcgagtgggcccacatg
gagctgaggcaccaggatcccgaccgggccatcgacctcatccggcgagcgaccacgcca
ccgtcgaccgaggccatgactcgcgccgctgctgccggcggcgaggacgttcgggcgaaa
ctgcaccggtgtctcaagctgtggctcgtgtacctggatctgatgacaacgcacgggtcg
ctcgagtccacctgcgccgtctacgacaagatgcacgacctcggcgtcgtcacgccattg
ctggtcctcgaccacgcgactctagattattcaacagcgaccctcctcgagcagcacggg
cggttcgaggacgcgttctgtgtgtacgagcggggcgtcaggtccttcaagcacccgcac
gccgacgccatatgggaggcgtacttgaccaagtccgtccagcggcacgggaggagcagg
ccggagagggtgcgggacctgttccaggcggccgccctgcaggcgccgccggagaggaag
aaggccgtgtacctcagatacccgaggttcgaggaggacttcggcctcgcgagccgcgcc
atgaaggtgtacgaggaggccacgggcgccgtccccaccggcgacaggctcggggtctac
ggggtgtacgtcgcgcgggctaccgagctctacggccttctgaaggcgagggacgtgtac
ggccaggcgatcgtcggcggcgggctgcccgacgagggcgcgagggcgatgtgcgtcggg
ttcgccgacatcgagatcgggctcggggaagttgcgcgcgctcgggcgctgtacgcctac
gcggcggccttcacggatcccggggtttgccatgatttttggaagcggtggaacgacttt
gaggtgcggcacggcgacgagggtacgttcagggagatgctccgcgcgaagaggaccatg
gcggccgttgccagagatggagccggggcgcggtgtgcgaccggcaccggcggcggcgtg
gtggagcaggggctgtgcccgtgcgcgggacaacgactcgacgttgctcggcaatccaag
cggatacgcctagtgtag
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