Triticum urartu (red wild einkorn wheat): 125532466
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Entry
125532466 CDS
T08232
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 56 isoform X1
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
tua
Triticum urartu (red wild einkorn wheat)
Pathway
tua03013
Nucleocytoplasmic transport
tua03015
mRNA surveillance pathway
tua03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tua00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
125532466
09122 Translation
03013 Nucleocytoplasmic transport
125532466
03015 mRNA surveillance pathway
125532466
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tua03019
]
125532466
03041 Spliceosome [BR:
tua03041
]
125532466
Enzymes [BR:
tua01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
125532466
Messenger RNA biogenesis [BR:
tua03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
125532466
Spliceosome [BR:
tua03041
]
Complex C
Other components
EJC/TREX
125532466
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
125532466
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
DNA_repr_REX1B
Motif
Other DBs
NCBI-GeneID:
125532466
NCBI-ProteinID:
XP_048552476
UniProt:
A0A8R7P8J2
LinkDB
All DBs
Position
1:581789349..581793667
Genome browser
AA seq
434 aa
AA seq
DB search
MMGEAKENDVYEEELLDYEEDDDKALDASSNANAKPAADASQPKKGYVGIHSSGFRDFLL
KPELLRAIQDCGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSSLQQIDPTAG
QVTALVLCHTRELAYQICNEFERFSKFLPELKVAVFYGGVHIKKHQDLLKNDCPHIVVGT
PGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLS
KEIRPICKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLTESEKNRKLNDLLDALDFNQVVI
FVKSVSRAAELNKLLCECNFPSICIHSGMTQEERLTRYKNFKEGHKRILVATDLVGRGID
IERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDVLNQVQERFEVDIK
ELPEQIDTSTYMPS
NT seq
1305 nt
NT seq
+upstream
nt +downstream
nt
atgatgggagaggccaaggagaacgacgtgtacgaggaggagctgctcgactacgaggag
gacgacgacaaggccctcgacgcctcctccaacgccaacgccaagcccgccgccgacgcc
tcccagcccaagaagggctacgtcggcatccacagctccggattccgcgacttcctcctc
aagcccgagctgctccgggccatccaggactgcggattcgagcacccctccgaagtgcaa
catgagtgcatccctcaagcaatcctcggaatggatgtcatctgccaagcaaaatctggg
atggggaagactgctgtctttgtcctgtcgtctctccagcagatcgatcctactgctggt
caggtgacagcgctcgtattgtgccacaccagagagctggcttaccagatttgcaacgag
ttcgagaggttcagcaaatttctgcctgaattaaaggttgctgtattctatggaggtgtt
cacatcaagaaacatcaggatttgctcaagaacgactgcccccacattgttgtgggcaca
cctgggaggattctagctctagctagagacaaggacctctctttgaagaatgtgaggcat
ttcattcttgacgagtgtgacaagatgcttgagtcactggacatgcggagggatgtccag
gagattttcaagatgacacctcatgataagcaggtcatgatgttttcggcaactctcagc
aaggagatccgtcccatttgcaagaaatttatgcaagatcctatggaaatttatgttgat
gatgaggcaaagttgacccttcacggtcttgttcagcactacataaaattgacagagtca
gagaagaaccgaaaattgaacgatctcttggatgctctcgatttcaaccaagttgtgata
tttgtgaagagcgttagcagggctgcagagctgaacaagttgctttgtgaatgcaacttc
ccttcaatctgcatccattctggcatgacccaggaagagaggctgacccgatacaagaac
ttcaaggaagggcacaagaggattcttgtggcgacggatttggttggcagagggatcgac
attgagcgtgtcaacattgtgataaactatgacatgcctgattcagctgatacctacttg
cacagggttggaagggctgggcgttttggcaccaaggggctcgccataacttttgtttcg
tcggcctcggactcggacgtccttaaccaggtgcaagaacggtttgaggtggacatcaag
gagctgcctgagcagattgacacttcaacatacatgccgtcgtag
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