Triticum urartu (red wild einkorn wheat): 125538624
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Entry
125538624 CDS
T08232
Name
(RefSeq) poly(A)-specific ribonuclease PARN
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
tua
Triticum urartu (red wild einkorn wheat)
Pathway
tua03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tua00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
125538624
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tua03019
]
125538624
Enzymes [BR:
tua01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
125538624
Messenger RNA biogenesis [BR:
tua03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
125538624
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
125538624
NCBI-ProteinID:
XP_048557840
LinkDB
All DBs
Position
2:540128512..540132804
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AA seq
737 aa
AA seq
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MQCRRRLAPLLRAPPPKTLLPRLLSRLVSSSSPSSPPPSSGGGDEAGDGSVAGVAVKQVT
RGNLAEALEELRARVRDAAFVGIDLEMSGVTSAPWRDTFELDRADVRYLKLRDSAKRFAV
LQLGVCPFRWDPAKSAFVAHPHNFFIFPRKELPYDSSSHEFLCQTTSLDFLAKHQFDFNT
CFHEGISYLSRAQEEEALQKLNVLHHDGLSAFPNTSKQEEDLQLKSTADLLFSERMKIRF
NEWRDAISTNPRVDNHKLGSNKFTTNQFQTVFFKMRPAIMLDGFTSHQLKLIQQVLRKNF
RDLMYVCTFGEDETSEKRVVYTDNNEDSILLMKDVQEDLLRSRKVKVESAIGIRHVIDLI
ASERKLIVGHSCFLDIAQVYSKFIGPLPSSIKDFALAINRIFPHVVDTRHLMSASDAVQH
LMRQKSKALSSAFSLLCPAFHSTAGEASIPAPVRIEVEADETMLSCFASGAKHEAGYDAF
MTGCVFAQLCAHIGVKFEDFTPKENLEMNKKLKKYINLLPPSFNSGTVLDLRTGMERPDA
CYKLRYPAAVHDNIVLIWGFQSGMSAKDIKGCICKVFGPASVTTVFSIDSTAVLIQFSKQ
ESVNDFLDLKATLEKQDSAISVLHPLSTILEGGQTRAANYDTYRDICSSSVTKYFFADQA
NAVCSASDTELRGENVDASDAPGTNSVLDETARTLVKQAEGAQHSSKKQDATDISCQDIL
DVLQDGKTLFGKQTRRT
NT seq
2214 nt
NT seq
+upstream
nt +downstream
nt
atgcagtgccgccgccgcctcgcccccctcctccgcgcgccgccgcccaaaaccctcctc
ccccgcctcctctcccgcctcgtctcctcctcctccccctcctccccgccgccctccagc
ggcggcggggatgaagccggggacggcagcgtcgccggggtggcggtgaagcaggtgacg
cgggggaacctggcggaggcgctggaggagctgcgggcgcgggtgcgcgacgccgcgttc
gtcgggatcgacctggagatgagcggcgtcaccagcgccccgtggcgggacaccttcgag
ctcgaccgcgccgacgtccgctacctcaagctccgcgactccgccaagcgcttcgccgtg
ctgcagctcggcgtctgccccttccgctgggaccccgccaagtccgccttcgtcgcccat
ccgcataacttttttatcttccctcgcaaggagctcccatatgacagttcatctcacgaa
tttctctgtcagaccacttcacttgacttcctagcaaaacaccagtttgatttcaacacg
tgcttccatgaaggaatatcttatttatccagagcacaagaagaagaggctcttcagaaa
ctaaatgtactgcatcatgatggactatctgcatttccaaatacttctaaacaggaagaa
gatttgcagttaaagagtactgctgatcttcttttctcagagagaatgaagatcagattt
aatgagtggcgtgatgcgataagcaccaaccccagggtggataaccataagttaggaagc
aataaattcaccaccaaccaatttcagacagttttcttcaaaatgcgcccagctattatg
cttgatgggtttacatcacatcaattaaaattaattcaacaggttttaagaaaaaacttt
agagacctcatgtatgtttgtacatttggtgaggatgaaacatcagaaaagagagtagtt
tatacagacaacaacgaagacagtatattattgatgaaagatgtgcaagaagatctactc
agaagcagaaaagtaaaagtggaatcagcaataggaatccgccatgtcattgatcttatt
gcctcagaaagaaaattgattgttggtcacagttgtttcctagatattgcacaagtatac
tccaaatttattgggcctcttccctcatccattaaggattttgccttggctatcaacaga
attttcccacatgttgtagatactaggcatcttatgtctgccagcgatgcggttcagcat
ctgatgaggcagaaaagcaaagcactttcttcagccttctcattattgtgccctgcattt
cattcaactgctggggaagcatctatcccggctcctgtgagaatagaagtcgaggcagat
gaaacaatgttatcatgctttgcttcaggtgctaagcatgaggcagggtatgatgcattc
atgactggatgtgtttttgcgcagttgtgtgcccatattggcgtcaaatttgaagacttc
acacctaaggagaacctagagatgaataagaagctgaagaagtatatcaatcttctgccc
cctagctttaacagcgggacagtgcttgatttgcgtactggaatggagagaccagatgca
tgttataagcttagatatcctgctgctgtgcatgataacattgttctcatctggggattc
caatctgggatgagcgcaaaggatataaagggctgcatctgcaaagtgttcggcccagct
tcagtaacgacagtcttctcaatcgattccactgctgttctcattcagttcagtaaacaa
gagtctgtaaatgatttcttggatctgaaggctacgttggagaagcaagatagtgctatt
tcagtcttgcaccctctttcaactatattagaaggaggccaaacacgagctgcaaactat
gatacctacagagacatctgcagctcatctgtaacaaagtatttctttgctgatcaagct
aatgcggtctgttcggcttcagatactgagctcagaggtgagaacgtagatgccagtgat
gcaccgggaacaaatagcgttcttgatgaaactgcgcgtaccttggtaaagcaggcagaa
ggagcccagcatagttccaagaagcaagatgctactgatatttcatgccaagacatcttg
gatgtgcttcaagatggcaaaactttgttcggcaaacaaaccaggaggacatga
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