Triticum urartu (red wild einkorn wheat): 125539109
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Entry
125539109 CDS
T08232
Name
(RefSeq) regulator of nonsense transcripts UPF2
KO
K14327
regulator of nonsense transcripts 2
Organism
tua
Triticum urartu (red wild einkorn wheat)
Pathway
tua03013
Nucleocytoplasmic transport
tua03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tua00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
125539109
03015 mRNA surveillance pathway
125539109
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tua03019
]
125539109
Messenger RNA biogenesis [BR:
tua03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
125539109
mRNA cycle factors
P-body specific factors
125539109
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MIF4G
Upf2
Motif
Other DBs
NCBI-GeneID:
125539109
NCBI-ProteinID:
XP_048558429
UniProt:
A0A8R7TKM1
LinkDB
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Position
2:602004781..602017888
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AA seq
1172 aa
AA seq
DB search
MEHMENESHEGKKQDEEGHHNNEVVRLEEYKKLIDVKTALRQSNLNPERPDASHLRTLDS
SIKRNTAVIKKLKAINDEQKDGLMEELKSVNLSKFVSEAVSYICEAKLRSADIQAAVQIC
SLLHQRYKDFSPCLIQGLLKAFFPGKAGDDIDPDKNSRAMKKRSTLKLLMELYFVGIVED
ASTFINIIKDLTSVEHLKDRETTQTNLTLLASFARQGKHFLGLQKHGQEAYDEFFMGLNI
TDDLKTFFKKSLSSYYDAAVAILQSEHASLRAMESENAKILNVKGELSDENTALYEKLRK
SFDQLLRCVSSLAEALDMQPPVMPDDGHTTRVTTASELSPSGKHFSAVEPIWDDEDTKAF
YESLPDLRVFVPGVLLGEAEPKLVDQHGKVHEQTGEHKLEQGAEVQNNAEASVPEHQLEG
KTNVGSKNREKKDKTGKEISKEKEADQKGDIEREKVRVTDGASLDNLLQRLPRCVSRDLI
DQLTVEFCYLNSKANRKKLARALFNVPRTSLELLPFYSRLVATLSTCMKDLPSMLLSMLE
EEFNFLMNKKDQIKIETKIRNIRFIGELCKFNIAPSGLVFSCLKACLDDFSHHNIDVACN
LLETCGRFLYLSQGTTVRMSNMLEILRRLKNVKNLDPHHSTLVENAYYLCKPPERSARVS
KVRPPLHQYIRKLLFSDLDKTSVQHVLRQLRKLPWAECEEYLVKCFLKVHKGKYSQVHLI
ALLTAGLSHYHDDFHVAVVDEVLEEIRVGLELNDYAMQQRQLAHMRFLGELYNYEHIDSS
VIFDTLYLITVFGHGTLEQDLLDPPEDFFRIRMIVTLLQTCGHYFDRGSSKRKLDRFLLH
FQRYILNKGPLPLDVEFDVQDMFAELRPNMTRYSSPELLASALAELEENEKTKQSESAAS
DVSCKSSANRPDKNGRGHEEVADSESYSGSRSIYRDGSEDGDSLYEENSDGRSGNGVVDD
DDTRPSGSDEEERVQVRHKVVQVDPKEQEDFDRELRALLQESLESRKLEPRVKSTLNMTV
PMKIVEGSKDSRATERESGEELTAEESGNAGGGSEVKVCVRVLVKKGHKQQTRQMLIPGD
CSLVQSTKQQEAALLEEKQNIKQKILEYNEREEEEFNASSFQTGFWGQGGSSAGGSIGSA
GRGSWDGSNRGGRGRQRYYIAGGIYHGYGRGR
NT seq
3519 nt
NT seq
+upstream
nt +downstream
nt
atggagcacatggagaatgagagccacgaggggaaaaagcaggatgaagaggggcatcat
aacaatgaggtggtccgtcttgaagaatacaagaagcttattgacgtaaagacggctctc
cgccagagtaacctaaaccctgagaggcctgatgcaagtcacctgagaactcttgattcc
agtattaagcgcaacacagcagttatcaagaagctcaaagcgataaacgatgaacaaaag
gatggcttaatggaagaattgaaaagtgtgaatctaagcaaatttgtcagtgaagcagtt
tcttacatttgtgaggccaaacttcgttctgctgatatacaagctgctgttcagatatgc
tcgctacttcatcaaaggtacaaggacttctctccttgccttattcaaggactgctgaaa
gccttctttccagggaaagctggagatgatatagatccagataagaactcaagggccatg
aagaaaagaagcacactgaagcttcttatggaattgtattttgttggaattgttgaagat
gctagtactttcataaacattataaaggatctgacgtcggtggaacatttgaaggaccgt
gaaacaactcagacaaatttgactctccttgctagttttgctcgccaaggaaagcatttt
cttggattacaaaaacatgggcaagaagcttatgatgagttttttatgggcctcaatatt
accgatgatctgaagacgttctttaagaaatccttgagctcttactatgatgccgcagtt
gcaattctccagtcagaacatgcgtctcttcgtgcaatggagtctgaaaatgcaaagatt
ttaaatgtcaaaggggaactaagtgatgagaatactgccttgtatgagaagcttcggaaa
tctttcgatcagttattgcgctgcgtttcatccttagctgaagctcttgatatgcagcct
cctgttatgccagatgatggacatacaacaagggtaactacggcgtcagagttatcccct
tctgggaaacatttttctgcagtagaacctatctgggatgatgaagacacaaaggcattt
tatgagtctttgcctgatctcagagtattcgtgcctggtgtactattgggagaagctgaa
ccaaagttggtagatcaacatggaaaggttcacgaacaaactggtgagcataaattggaa
caaggagctgaagttcaaaacaatgctgaagcttctgtccctgagcaccagttggaagga
aaaacaaatgttggatccaagaatagagaaaaaaaagataaaacaggcaaagaaatttct
aaagaaaaagaggctgatcaaaaaggagatattgaaagagaaaaagtaagagtcacagat
ggcgcaagtttggacaacctgcttcagaggctgccaaggtgtgtgagccgagatctaatt
gaccaattgacggtggagttttgctatctgaattctaaagcaaacaggaagaaacttgca
cgagctttattcaatgttccaaggacttcgttggaactgttacctttctactcccgttta
gttgccactttgtccacatgcatgaaggatctcccaagtatgctcttgtcaatgcttgaa
gaagagtttaactttttgatgaacaagaaggatcagatcaaaatcgaaacaaaaattaga
aatattagatttattggggaattgtgcaaattcaatattgctccatcaggccttgttttt
agttgtttgaaggcttgcctagatgattttagccatcataacattgatgtggcctgcaat
cttcttgagacctgcgggcgctttctttatctctcacaaggaactacagttcgcatgtca
aacatgctggaaatactgaggaggttgaaaaatgtgaagaatttggatccacaccacagc
acacttgtagagaacgcctattacttatgcaaaccaccagaaagatctgccagagtctct
aaagtccggccacctctgcatcagtacataaggaagctgcttttctcagatcttgataaa
acaagtgttcagcatgttcttcgtcagttacgcaagttaccttgggctgagtgtgaggag
tacctggtgaaatgttttctcaaggttcacaagggaaaatatagccaagttcatctgatt
gctcttctaactgctggtcttagtcactatcatgatgattttcatgtggctgtggtagat
gaggttctagaagagattagagttggacttgagctgaatgactatgcaatgcaacagcga
caacttgcccacatgcgattccttggggagctgtataactacgagcatattgattcatca
gttatatttgacacattgtaccttattactgtatttggtcatggaacactggaacaagat
ctgcttgatcccccagaagatttctttaggataaggatgattgttacacttctccagacg
tgtggtcactattttgatagaggctcttcaaaaagaaagcttgacagatttttgctacat
tttcaaagatatattctgaacaaagggccattgccacttgatgttgagtttgatgtgcag
gacatgtttgctgagctacggcctaacatgactaggtattcatctccagaactgttggct
tctgctctggctgagcttgaagaaaatgagaagacgaaacaatccgaaagtgctgcttct
gatgtcagctgcaagagctcagcaaacaggcctgacaaaaatggcaggggccacgaagaa
gtagcagacagtgaaagctactcaggtagcagaagcatctatcgcgatggaagtgaagat
ggagattctctgtacgaagaaaactcagatggcaggtcagggaatggggttgtagatgac
gatgacaccaggccttctggttctgatgaagaagaaagggtccaggttagacataaggtg
gtgcaagttgaccctaaggagcaggaagactttgatcgggagctgagggcccttctacag
gaaagcttggagtcgcgcaagttggagccacgggtgaaatccactttgaatatgactgta
ccgatgaaaatcgttgaggggtcaaaggactcgagagccactgaaagagagagtggagaa
gagcttacagctgaggaaagtggtaatgctgggggcggtagtgaggtcaaggtgtgcgtc
agggtgcttgtgaagaaagggcacaagcagcagacaaggcaaatgctcattcctggggac
tgctcactcgttcagagcacaaagcagcaagaggcggctctgctcgaggagaagcaaaac
atcaagcagaaaatcctggaatacaacgagagggaggaggaagaattcaacgcatcatca
ttccaaactgggttctggggtcaaggaggaagcagcgcaggcggcagtatcggctcggcc
ggtcgtggttcatgggacggttcaaacagaggcggtcgcggccggcagcggtactacatc
gccggcgggatctatcatggctatggcaggggaaggtga
DBGET
integrated database retrieval system
