Triticum urartu (red wild einkorn wheat): 125544886
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Entry
125544886 CDS
T08232
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH6-like isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
tua
Triticum urartu (red wild einkorn wheat)
Pathway
tua03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tua00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
125544886
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tua03019
]
125544886
03012 Translation factors [BR:
tua03012
]
125544886
Enzymes [BR:
tua01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
125544886
Messenger RNA biogenesis [BR:
tua03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
125544886
Translation factors [BR:
tua03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
125544886
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
HA2_C
R3H
OB_NTP_bind
HA2_N
Ank_2
Ank_5
AAA_19
AAA_22
nSTAND3
ATPase
AAA_16
ResIII
Ank
ABC_tran
AAA_23
Rad17
AAA_7
PhoH
Motif
Other DBs
NCBI-GeneID:
125544886
NCBI-ProteinID:
XP_048564625
LinkDB
All DBs
Position
3:complement(544309196..544319565)
Genome browser
AA seq
1280 aa
AA seq
DB search
MARISVHPNLSPHHRPLLPQIAPPPPRCPRRFPPGPPQQHTKGKATAAGSLHSGTRTGRR
AAPNAAAAAPPPPPPPLRDDGMGRKGPKGPKGAKANADALTKAALAAMSEETTVRITTVL
EDFRASDAQVHTFEPSLTNQERAAVHAMCKKMGMISKSKGYGERRCLSVYKTKNTQAPGK
EEGPSKLGFSEEARQILLDLFTHYPPDDAELNGDAVKNPGDKAAKIRWKTDTAFSRPAMQ
KHDIAKKVKMLTSKLSDPRQLRKIGEDRSKLPIASFKDHISSTLENHQVVLISGETGCGK
TTQVPQYILDHVWGKGESCKIICTQPRRISAMSVAERISVERGETVGDTVGYKIRLESKG
GKNSSIIFCTNGVLLRVLIGRVTNSSNRQRAADDVIMGITHIIVDEIHERDRFSDFMLAI
LRDLLPMYPHLHLVLMSATIDAERFSQYFNGCPVIRVPGHTYPVKTFYLEDVLSILQSVG
DNHLNPETNDLGLDSVLTDDYKSSMDEAISMALASDEFDLLIELISIEQNPEIFNYQHSE
TGVTPLMVFARKGQLGDVCMLLSFGVDCSARDHDGKSALDWAQQENQVEAYEVIKKHMDC
SPAKLPEENELLKKYLATINPEHIDTVLIERLLRKICTDSNEGAILVFLPGWEDINQTRE
RLLASSFRDSSKFLVLSLHSMIPSSEQKKVFKRAPAGVRKIILSTNIAETAVTIDDIVFV
LDSGRMKEKSYDPYNNVSTLHTSWVSRANARQREGRAGRCQPGICYHLYSRFRAASLPEF
QIPEIKRMPIEELCLQVKLLDPNSKIADFLKKTLDPPVTETVKNAITVLQDLGALTQNEQ
LTDLGEKLGSLPVHPSTSKMLLFGILMNCLDPALTLACAADYRDPFVLPMAPDERKRAAA
AKVELASLYGGYSDQLAVVAAFDCWTCAKEKGQEALFCSKYFVASNTMNMLSSMRKQLHS
ELAQRGFLPADTSACSLNAKVPGIISAVLVAGAYPMVGRLLPPRKNARRAVVETASGAKV
RLHPHSSNFNLSFNKSSGNPLMVFDEITRGDGGMYVKNCSVVGSYPLLLLATEIAVAPPD
DVSDEDDEGSSGDEAGKSTLGQQKEEIMSSPDNTVSVVVDRWLRFDATALDVAQIYCLRE
RLASAILFKVKHPQDVLPPALGATMYAIACILSYDGLPGNLATKHGSGQSSADASGSAEG
RKGGFIPPGGFLMSLLSDIPPNALHHQKSSNHPGGGSGHIRSSRAPAGRFNQSQQRPGRN
SSGPGSSASQSFKRQRDAAR
NT seq
3843 nt
NT seq
+upstream
nt +downstream
nt
atggcccgcatatcggtccatccaaacctctccccgcaccaccgcccgctcctcccacag
atcgcaccgccaccaccacgttgccctagaaggtttccgcccggtccaccgcagcagcac
acaaagggcaaagcgaccgcagcgggaagcctccacagcgggacccgaaccggccgccgc
gccgccccgaacgccgccgccgccgcgccgcccccgcccccgccccctctccgcgacgac
gggatggggcgaaaggggcccaaggggcccaagggggccaaggcgaacgccgacgccctc
acgaaggccgccctggccgccatgagcgaggagacgaccgtacgcatcaccacggtgctg
gaggacttccgcgcctccgacgcccaagtgcacacattcgaacctagtcttaccaatcaa
gagcgggctgcagtacatgctatgtgtaaaaagatgggcatgatatcaaagagtaaaggg
tatggggaacggcgatgcctttctgtttacaaaactaaaaacacacaggcgcctggtaaa
gaagaaggccctagcaaactcggattttctgaagaagcaagacagattttgttagatctg
tttacacactatcctcctgatgatgctgaattgaatggtgatgctgtcaagaatcctggc
gataaggctgctaaaattcgatggaagacagatacagccttttccaggccagctatgcag
aaacatgatatagcaaagaaggtcaagatgcttacatcgaaattaagtgatcctagacag
ttgaggaagattggtgaagacagatccaaacttccgattgcatccttcaaagatcacatt
tcttctaccctagaaaatcaccaggtggttcttatttctggagaaacaggctgcggtaaa
actacccaggttccgcaatatatcttagatcatgtgtggggcaagggtgaatcatgtaag
atcatttgtactcaaccgcggcggatatcagctatgtcagttgccgaacgaatctctgtt
gaaagaggagagactgttggtgatacagttgggtacaagatacgtttggaatcgaaggga
gggaagaattcgtcaatcattttctgcacaaatggtgttctcttgagggtgttgataggc
agagtaactaacagttcaaataggcaacgcgcagctgatgatgtaattatggggataaca
cacattattgtggatgaaatccatgaaagggataggttttctgatttcatgctggctatc
ttgagagatctgctgccgatgtatcctcatcttcatttggtgctcatgagtgcaacgatt
gatgctgagcggttttcacaatatttcaatggatgcccggttattcgagtcccaggccat
acctatccggtcaaaactttctatttggaggatgtgctttctattctgcaatctgtaggt
gataatcatcttaatcctgaaacaaatgatctgggacttgacagtgtgctaaccgatgat
tacaaaagctcaatggatgaagcaattagcatggctttagccagtgatgaatttgatctt
ctcattgagcttatttctatagagcagaacccagaaatcttcaactaccaacattcagag
actggtgtgacacctttgatggtttttgccaggaagggtcagcttggggatgtctgtatg
cttttatcatttggtgtggattgttctgcacgggatcatgatggaaaatctgcattagat
tgggcacagcaagagaatcaggtagaggcttatgaagttattaagaaacatatggattgt
agtcctgcaaaattgcctgaagaaaacgagctgcttaagaaatacttggccactatcaac
ccagaacacattgatactgtgctgatagaacggttgcttagaaaaatatgtactgactcc
aatgaaggagctatcttagtcttccttcctggttgggaagatataaatcaaacacgggag
aggttacttgcttcttcctttcgggattcttcaaaatttcttgtactgtcacttcattcc
atgataccatcttcagagcagaaaaaggttttcaaacgtgcaccggcaggggttcgtaaa
attattctctcaaccaacatagcggagactgcagtaacaattgatgatattgtatttgtt
ctagatagtgggaggatgaaagagaaaagctatgatccatacaataatgtgtctacactt
catacttcttgggtatctcgagctaatgcaagacagcgtgaaggacgtgccggtcgttgt
cagccaggaatttgctatcatctttactctagatttcgagcagcctcgttgccagaattc
caaattcctgaaattaagaggatgcctattgaagagctgtgtttgcaggtcaaactgctt
gatccaaactctaaaatagcagactttttaaagaagaccttggatcctccagttacagag
actgtaaaaaatgctattactgtgcttcaggatcttggtgctttaactcaaaatgaacaa
ttgacagatttgggtgaaaagttaggttctctcccggtccatccatccacaagcaagatg
ctcctgtttggtatattgatgaactgccttgatcctgcattgacattggcatgtgcagca
gactatagagatcctttcgtccttcctatggctccggatgagagaaaaagggctgctgca
gccaaggttgagcttgcttcattatatggtggatatagtgaccagcttgctgttgtagca
gcatttgattgttggacgtgtgccaaagagaaaggacaagaagctttgttttgttcaaag
tactttgtagcttcaaacaccatgaatatgttgtctagtatgaggaaacagcttcacagt
gaactagctcaaagaggatttcttcctgctgatacatctgcctgcagcttgaatgctaaa
gttccaggtatcattagtgctgtccttgtggctggcgcttacccaatggtaggacgattg
ctccctcctcgcaaaaatgctagaagggcagttgtggaaacagcaagtggtgccaaagtt
cgactacacccgcattcttccaactttaacttgtcatttaataaatcctctgggaatcca
ctaatggtatttgatgaaatcactcgaggtgatggtggaatgtatgtaaagaactgttca
gttgttggatcatatcctttacttctgcttgctacagaaatagctgttgctccacctgat
gatgtaagtgatgaggatgatgaaggttccagtggggatgaagcgggaaaaagcactctg
ggacaacaaaaggaggagatcatgtcttctcccgacaacactgtttcagttgttgttgat
cggtggctccgatttgatgctactgctctggatgttgctcagatatactgcctacgagaa
cgcctagcatctgctattcttttcaaagtgaaacatccacaggatgttctcccgcctgct
cttggagcaacgatgtatgcgattgcttgtatcctatcgtatgatggcttgcctggtaat
ttggcaacaaaacatggttcaggtcagagctcagcagatgctagcggatcagctgaggga
aggaaaggtggttttattccgcctggtggtttccttatgtcattgctatcggacatacca
cccaatgcacttcatcatcagaagtcatctaatcatccagggggtggttcagggcatatt
aggtcatcgagggcccccgctggtagatttaatcagtcgcagcagcgtcctggccgcaac
agctctggaccagggagttcagcatcacaatctttcaaaagacagcgggacgctgcacgg
tga
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