Triticum urartu (red wild einkorn wheat): 125544897
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Entry
125544897 CDS
T08232
Name
(RefSeq) protein PAT1 homolog 1-like
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
tua
Triticum urartu (red wild einkorn wheat)
Pathway
tua03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tua00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
125544897
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tua03019
]
125544897
Messenger RNA biogenesis [BR:
tua03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
125544897
mRNA degradation factors
5'-3' decay
Decapping complex
125544897
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
125544897
NCBI-ProteinID:
XP_048564642
UniProt:
A0A8R7TYE5
LinkDB
All DBs
Position
3:544670962..544677061
Genome browser
AA seq
808 aa
AA seq
DB search
MPGAEADGAGGAGASSSSTADSFDAGQYAFFGKEPRDGLELGCLEADGGHGNGGGFSGPE
DGGLYRLSSVGEEIDNLSNLSDVDDLASTFAKLNRTISGTRNPGVIGDRRSISRGSSLTV
DWTEDVEFPNYQDILENEEFQEGKRWWSSQSHSLVQQGDSKPLSRTSSYPQQPLQHRSSE
PITGPKSPPFTSFPPPGGRSPHPAQGLTRHGSIPSFGAGIQMGSPSMPLPGSPYHMVGLP
HGLPYGGSMPFGGPNMHVGNPMQNDWSNQANLFTGEHLNLLPNLLQKQISLPNSPMSSLL
FSQQQQRLAQLQPSHHQNYLNLPPHLFYHHHPPEIPGRFESATSLPSSRDKRSRSGRGKH
SLRFSQPPSDTTGSQNGESGGLKFRSKYMSSEEIESILRMQHSASHSSDPYVVDYYHQAC
MAKKGSSSKQKTNFSPTSVKDLPSKSRSSGDQHAYLQVDALGRVSFSSIRRPRSLLEVDN
PLSGEGPHDQKSSVRSLEKEPMLAARVTVEDAIGLLLEVDDIDRLLQSSQAQENSFQLRR
RRQVLLEGLAASLQLADPLGPSKSANSSGLAPKDDIVFLRIVSLPKGRKLLARYIRLIVP
GSELTRIVCMAIFRHLRFLFGGLPSDSSAAETTVALAKTVSTCAHHMELGALSACLAAVV
CSSEQPPLRPLGSSAGDGASLIIKSVLDRATELLTDQRAVSSYTPSNRALWQASFDAFFG
LLTKYCLSKYESILQMFVMQASGSVIGSEASQAPSREMPVELLRASLPHTNEQQRQMLLD
FAQRTTPASSFNPPGASGGHISSESVPG
NT seq
2427 nt
NT seq
+upstream
nt +downstream
nt
atgccgggcgctgaggccgacggcgccggcggcgccggcgcctcctcctcctccactgca
gatagttttgacgccgggcagtacgccttcttcgggaaggagccgcgcgacgggctcgag
ctaggttgcttggaggctgatggtggccatggcaatggcggtggattcagcgggccagag
gatggtggcttgtaccggctctcttcggttggagaagagattgacaatctaagtaacttg
tcggacgtcgatgatcttgcgagtacttttgctaagttgaaccgaaccattagtggaaca
cggaatcctggtgttatcggtgacagacgatccatttcaagaggaagttctttaactgtc
gattggactgaggatgtagagtttcccaattatcaagatatattagaaaatgaggaattc
caggaaggtaaaagatggtggtcatcacagtcacattctttggtgcagcaaggggacagc
aaaccgctaagtcgaacatcttcctatcctcagcagccactgcagcaccgttccagtgaa
cctatcacaggaccaaagtctcctccgtttacctcgtttccgccaccaggtggtagatca
ccacatcctgctcaaggtcttacacgtcatgggagcattccatcatttggagctgggata
cagatgggttctccgagcatgccactgccaggttccccgtatcatatggttgggttacct
catggactaccatatgggggaagcatgccctttggtggtcctaatatgcatgtaggcaat
ccaatgcaaaatgactggtcaaaccaagccaacctgttcactggggagcaccttaatcta
ctgccaaacttattacagaaacaaatatcgcttccgaatagcccaatgtcatcactgcta
ttctctcagcaacagcagagattggcacagctccaaccatcccaccatcagaattaccta
aatttaccaccccacctattctaccatcatcaccccccagagataccaggcaggtttgaa
tctgctaccagtcttccttcatcaagagacaagagatcaagatcaggaaggggaaaacac
agtttacgtttttctcaaccaccatctgatactactggtagtcagaacggtgagagtggt
ggactgaagtttagatccaagtacatgtcatctgaagagatcgagtctattctaagaatg
cagcactcggcaagtcacagcagtgatccttatgttgttgattattatcatcaagcttgc
atggcaaaaaagggttccagttctaagcaaaagaccaatttctccccaacatcagttaaa
gacttgccctccaagtctagatcaagtggtgaccagcatgcatatcttcaggtcgatgct
cttgggagagtttctttctcttccattcgcaggccccggtctcttcttgaagttgacaat
cctttgtcaggtgagggtcctcatgatcagaagtcttccgtgaggtccctggagaaagaa
cctatgctagcagccagggtcactgttgaagatgccattggtcttcttcttgaggtggat
gatattgacaggctcctgcagtctagccaggcacaggagaatagctttcagctgaggcga
aggcgacaagttctccttgaaggtctagccgcatcacttcagcttgctgaccctcttggg
cccagcaaatctgccaattcatctggtttagcccctaaggatgatattgtctttcttcgc
attgtttctcttcccaaaggacgtaagcttctggctcgttatatccggcttattgtccct
ggaagcgagttgaccaggattgtgtgcatggctattttccgacacctgaggttcttgttt
gggggtttaccatcagattcaagtgcagcagagacaacagttgctctggcaaagactgtt
tcgacttgtgctcaccatatggagcttggtgctcttagtgcttgccttgctgcagtcgtc
tgttcatctgaacaaccacctctccgtcctcttggtagctctgctggtgacggggcttct
cttattatcaagtcagtactggaccgagcaactgagttgctgactgatcagcgtgccgta
tccagctataccccgtcaaaccgagctctctggcaggcatcgtttgatgctttctttggg
cttctgacaaaatactgcctcagtaagtatgaaagtattctgcagatgtttgtgatgcag
gcatcaggctctgtgattggatctgaagcctctcaagcacccagcagggagatgccagta
gagttgctacgtgcaagcctccctcacacaaacgagcagcaacggcagatgctgcttgat
ttcgctcagagaaccacgcctgccagcagttttaatccccctggtgctagcggtggacac
atctcttctgaatcggttcctggttaa
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