Triticum urartu (red wild einkorn wheat): 125546033
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Entry
125546033 CDS
T08232
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH9-like
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
tua
Triticum urartu (red wild einkorn wheat)
Pathway
tua03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tua00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
125546033
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tua03019
]
125546033
03041 Spliceosome [BR:
tua03041
]
125546033
03009 Ribosome biogenesis [BR:
tua03009
]
125546033
03016 Transfer RNA biogenesis [BR:
tua03016
]
125546033
Enzymes [BR:
tua01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
125546033
Messenger RNA biogenesis [BR:
tua03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
125546033
Spliceosome [BR:
tua03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
125546033
Complex C
U4/U6.U5 tri-SnRNP related factors
125546033
Ribosome biogenesis [BR:
tua03009
]
Eukaryotic type
Pre-60S particles
Helicases
125546033
Transfer RNA biogenesis [BR:
tua03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
125546033
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DEXQc_Suv3
ResIII
Helicase_C
ATPase_2
Motif
Other DBs
NCBI-GeneID:
125546033
NCBI-ProteinID:
XP_048566101
UniProt:
A0A8R7U0R3
LinkDB
All DBs
Position
3:complement(702961628..702968422)
Genome browser
AA seq
995 aa
AA seq
DB search
MEASLKRKAADAPADGPDPPLKAPRADAAPLLPAAAERVACLHDVSYPEGYDASASGPRV
VAGGGEGAAPAKTFPFPLDPFQSEAIRCLDNGESVMVSAHTSAGKTVVALYAIAMSLRNQ
QRVIYTSPIKALSNQKYREFKEEFSDVGLMTGDVTIEPNASCLVMTTEIWRSMQYKGSEV
MREVAWVIFDEVHYMRDRERGVVWEESIVMAPKNSRFVFLSATVPNAKEFADWVAKVHKQ
PCHIVYTDYRPTPLQHYVFPAGGDGLYLVVDENGKFREDSFQKSLNVLAPATGSDKKREN
GKRQKGLVSAGKTNEESDIFKMVKMIIQRQYDPVILFSFSKRECEFLAMQMAKMDLNGDD
EKVNIETIFWSAMDLLSDDDKKLPQVSNMLPLLKRGIGVHHSGLLPILKEVIEILFQEGL
IKCLFATETFSIGLNMPAKTVVFTNVRKFDGDRFRWLSSGEYIQMSGRAGRRGIDLRGIC
ILMVDEKMEPSTAKMMLKGGADSLNSAFHLSYNMLLNQLRSEDGDPEKLLRHSFYQFQAD
RVLPDLEKQVRELEIERSSMVIEDEESVKDYYDLLQQYRTLKKDVRDIVLSPKYVLPFLQ
SGRLVRVQYSTDGSTFSIDENVSWGIIINFEKVKTNAEERRPEDCDYTVDVLTRCSVIKD
ISGKKTMKVIPLKSRGEPVVISLPLSQIDGLSSVRMYIPKDLLPVEARENTLRKVDEVLS
RFAKDGVPLLDPEEDMEVKSSSYRKAARRIEALESLFEKHDIRNAPHIQQKLKLLHAKQE
IKAKIKSIKKTMRASTALAFKDELKARKRVLRRLGYITSEDVVEIKGKVACEISSADELT
LTELMFSGTLKDATVEQMVALLSCFVWQEKLQDAPKPREELDLLFYQLQETARRVANLQL
ECKIQIDVESFVNSFRPDVMEAVYSWARGSKFHQIMEMTQVFEGSLIRAIRRLEEVLQQL
ILASQSIGETQLEAKLEEAVSKIKRDIVFAASLYL
NT seq
2988 nt
NT seq
+upstream
nt +downstream
nt
atggaggccagcctcaagcgcaaggccgcggacgcccccgccgacgggcccgacccccct
ctcaaggcgccgcgcgcggacgccgctcccctgctgccggccgccgccgagcgcgtcgcc
tgcctgcacgacgtctcctaccccgagggatacgacgcgtccgcctccggcccgcgtgtc
gtcgcgggcggcggcgagggcgcggccccggccaagacgttccccttcccgctcgacccc
ttccagtccgaggccatccgctgcctcgacaacggcgagtccgtcatggtttcggcgcac
acgtcggcggggaagacggtggtggcgctgtacgcgatagccatgtccctgcgcaaccag
cagcgggtcatctacacctcgcccatcaaggccctcagcaaccagaagtacagggagttc
aaggaggagttctccgacgtcggcctcatgaccggggacgtcaccatcgagccaaacgca
tcttgcttggtcatgaccacggagatttggcgcagcatgcagtacaaggggtccgaggtg
atgagggaagtcgcttgggttatcttcgatgaggtgcattacatgcgtgacagggagagg
ggagtggtgtgggaggagagtattgtgatggctcccaaaaactcgcggtttgtgttcctc
tcggcaactgtacctaatgccaaggagtttgctgattgggttgccaaggtacataagcaa
ccttgtcatatagtatacaccgactaccgacctacacctctccagcattatgtatttcct
gctggaggtgatggcctatacctggtcgttgatgaaaacggcaagttcagagaggacagt
tttcagaaatctctgaatgtccttgcccctgctactggcagtgacaagaagagggaaaac
gggaagcggcaaaagggcctcgtctcggcaggcaaaactaacgaagaaagtgacatattc
aagatggtgaaaatgataattcagcgtcaatatgaccctgtgatacttttcagctttagc
aaaagagagtgtgaatttcttgctatgcagatggccaagatggacttgaatggagatgat
gagaaagtgaacattgaaaccattttttggagtgccatggatttgctttcagatgatgac
aaaaagcttccccaggtttcaaatatgcttcccttattgaaacgtggcattggagtgcat
cattctggtctgttgcccattttaaaggaagtgattgagatacttttccaagagggcctc
atcaagtgtctgtttgccacagagacattcagtattggattgaacatgcctgcaaagact
gttgtgtttaccaatgtacgtaagtttgacggagataggttcagatggttgtcaagtgga
gagtacattcagatgagcggccgtgctggtcgtcgaggtattgatctgcgtggtatctgc
atattgatggtagatgagaaaatggaaccctcaactgccaaaatgatgctgaaaggaggt
gctgatagtttgaacagtgcctttcatttgagctacaacatgttgttgaatcaactgcgc
tctgaggatggtgacccggaaaagcttcttcggcattcattctaccaatttcaagcagat
agagttctccctgatctcgagaagcaagtcagggaactggaaatagaaagaagttccatg
gttattgaagacgaggagagcgtgaaggactactatgatctcttacagcagtacagaact
ttaaagaaggatgtccgtgatattgtactttcgccaaaatatgttctgcctttcttgcaa
tccggaaggcttgttcgtgttcaatacagtacagatgggtccaccttctctattgacgaa
aatgtgtcgtggggaattataataaattttgagaaggtgaaaaccaatgctgaagaaaga
agacccgaggattgtgattacactgttgatgtcctcaccagatgttctgtaatcaaggac
ataagtggaaagaagacaatgaaggttattcctctcaaatcccgtggagaaccggttgtt
atttcattgccactttctcagattgatggactaagtagcgttcggatgtacatacccaag
gatcttttgcctgtagaagctcgagaaaacacattgaggaaagttgacgaagtgctttca
aggtttgctaaagatggggttcctctcttggatccagaagaagatatggaagtaaaatct
agctcctaccggaaagctgccagaagaatagaagctcttgagagcttatttgagaagcat
gacattcgtaatgctccccatatccaacagaagctgaagctcttgcatgctaagcaagaa
ataaaagccaaaataaagtccataaagaaaacaatgcgggcctcgactgctctagccttt
aaggacgagctcaaggcacgaaaacgagttcttcgtaggctgggatatatcaccagtgag
gatgtagtcgaaataaagggcaaagtggcatgtgagatcagctcagctgacgaactgaca
ttgaccgagcttatgttcagtggtactttgaaggatgctactgtggagcagatggtggcc
ctgctttcttgctttgtttggcaggaaaagcttcaggatgccccaaagccaagggaggag
ctcgacctgctcttctaccagttgcaagagacggcgcgaagggtcgcgaacctccagctt
gaatgcaagatccagatcgatgttgagagtttcgtgaactccttccgccccgacgtgatg
gaggccgtgtactcgtgggccagagggtcgaagttccaccagatcatggagatgacacag
gtgttcgagggcagcctgatcagggccatcaggcggctggaggaggtcctgcagcagctg
atcctggcgtcccagtcgatcggcgagacccagctcgaagccaagctcgaggaggcggtc
agcaagattaagagggatatcgtgtttgctgcgtcgctgtacttgtga
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