Triticum urartu (red wild einkorn wheat): 125551246
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Entry
125551246 CDS
T08232
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH3 isoform X1
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
tua
Triticum urartu (red wild einkorn wheat)
Pathway
tua03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tua00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
125551246
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tua03041
]
125551246
03009 Ribosome biogenesis [BR:
tua03009
]
125551246
Enzymes [BR:
tua01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
125551246
Spliceosome [BR:
tua03041
]
Complex A
U2 snRNP components
U2 related factors
125551246
Complex B
125551246
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
125551246
Ribosome biogenesis [BR:
tua03009
]
Eukaryotic type
90S particles
Helicases
125551246
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
Helicase_C
DEAD
AAA_22
AAA_19
ResIII
ABC_tran
nSTAND3
SRP54
T2SSE
AAA_30
AAA_7
TrwB_AAD_bind
AAA_29
Motif
Other DBs
NCBI-GeneID:
125551246
NCBI-ProteinID:
XP_048570359
LinkDB
All DBs
Position
4:181426867..181430472
Genome browser
AA seq
721 aa
AA seq
DB search
MGTERKRKVSLFDVVDETSVSAKLGRAGINGAAAAAAANPSINRWNGRPYSARYLEILEK
RRTLPVWQQKDEFLRVLRDNQTLILVGETGSGKTTQIPQFVLEAEGLSNRSMVACTQPRR
VAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCSSHKTVLKYLTDGMLLREAMADPLLERYK
VIVLDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEAEKFQGYFSGAPLMKVPGR
LHPVEIFYTQEPERDYLEAAIRTVVQIHMCEPAGDILVFLTGEEEIEDACRKINKEVNNM
GDQVGPVKVVPLYSTLPPAMQQKIFDPAPPPLKEGGPAGRKIVVSTNIAETSLTIDGIVY
VIDPGFSKQKVYNPRIRVESLLVSPISKASAHQRAGRAGRTQPGKCFRLYTEKSFNGDLQ
PQTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGALDDEGNL
TSLGEMMSEFPLDPQMSKMLVISPRYNCSNEILSISAMLSVPNCFLRPREAQKAADEAKA
RFGHIDGDHLTLLNVYHAYKQNNEDPTWCYENFVNARAMKSADNVRQQLVRIMTRFNLKM
CSTDFNSREYYVNIRKAMLSGYFMQVAHLERTGHYLTVKDNQVVHLHPSNCMDHKPEWVI
YNEYVLTTRNFIRTVTDIRGEWLIDIAPQYYDLTNFPSCEAKRVLERLHNKRERERAASR
N
NT seq
2166 nt
NT seq
+upstream
nt +downstream
nt
atggggacggagcggaagcgcaaggtgagcctcttcgacgtggttgacgagacctccgta
tccgctaagctcggccgcgccggcatcaatggtgccgccgccgccgccgcggccaatccg
tccatcaaccggtggaacggccggccctactcggcgcggtacctagagatcctcgagaag
cgccgcacgctccccgtctggcagcagaaggacgagttcctccgcgtcctccgcgacaac
cagaccctcatccttgtcggagaaaccggaagtggcaagaccactcagatcccccaattt
gtgctcgaggctgaaggtttgagcaaccgctctatggttgcctgcacccagccgcggagg
gttgctgcaatgtcggtctctcggcgtgtcgcggaggagatggatgtcacaatcggggag
gaagttggttacagtatccgatttgaagattgcagcagtcacaaaactgttctcaaatat
ttgacagatggtatgcttctgagagaagcaatggcagacccacttttagagaggtacaag
gtgattgttcttgacgaggctcatgagcgcacgttggcaacggatgttctgtttgggctt
ctgaaggaagttctaaagaacaggcctgacttgaagcttgttgttatgagtgctactctt
gaggcagagaagtttcaaggttatttcagtggtgcaccattgatgaaggttcctggtaga
cttcatcccgttgagatcttctatacacaggaaccagaaagggactatctagaagctgct
atcaggacagttgtgcagatacatatgtgtgaacctgctggtgatatccttgtattcctt
actggagaagaggagattgaggatgcgtgtcggaaaataaacaaggaagttaataacatg
ggtgatcaggttggcccagttaaagtggtgccattgtactctactctcccccctgcaatg
cagcagaagatttttgaccctgctccacctccattgaaagagggaggtcctgctggaagg
aaaattgttgtgtccacaaacattgctgagacatccctaaccattgatggtatagtgtat
gttatagatccagggttttccaaacagaaggtttacaatccaaggataagggtggaatcc
cttttggtgtctccaatttccaaggcaagtgcgcatcagcgagctggtcgtgctggaaga
acacagcctgggaagtgcttcaggttgtacacagagaagagttttaatggtgatttacag
ccacagacctacccagaaattcttcgatcaaacttggcaaatacagttcttactctgaag
aagcttggaattgatgatttagtgcattttgacttcatggatcctcctgcgcccgaaact
ctaatgagggccttggaagttctgaactacttgggggcactcgacgatgaaggcaaccta
acatctttaggtgaaatgatgagtgagttccccttagacccacagatgtcaaagatgctt
gtcatcagtccaaggtacaactgttcaaatgagatcctctcaatatctgccatgctatca
gtacccaattgctttctccggcctagggaggcacaaaaggctgctgatgaggcgaaggct
cgatttgggcacatcgatggggatcatctgacacttttgaacgtgtaccatgcatacaag
caaaacaatgaggatcctacatggtgttatgagaattttgtcaatgcccgggcgatgaag
tctgctgataatgttagacaacaacttgtgcgcatcatgaccagattcaacctcaagatg
tgcagtacagacttcaacagtcgtgagtactatgtcaacatcaggaaagcaatgctttca
gggtactttatgcaggttgctcatctggagcgaactgggcattacttgaccgttaaggat
aatcaggttgtccatcttcatccctcgaattgcatggaccataagccggaatgggtcatc
tacaatgaatatgttttgaccaccaggaatttcatccgcacagtcaccgatatccgtgga
gagtggctgatcgatatagctccacagtactatgatctgaccaatttcccatcatgtgag
gccaagcgtgttcttgagaggctacacaataagagggagagggaaagagctgctagtagg
aactga
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