Turicibacter sp. KK003: VXM77_00700
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Entry
VXM77_00700 CDS
T10570
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
tuk Turicibacter sp. KK003
Pathway
tuk03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tuk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
VXM77_00700 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tuk03400
]
VXM77_00700 (mfd)
Enzymes [BR:
tuk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
VXM77_00700 (mfd)
DNA repair and recombination proteins [BR:
tuk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
VXM77_00700 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
DEAD
Helicase_C
TRCF
CarD_TRCF_RID
Cas3-like_C_2
UB2H
RecG_dom3_C
DUF99
IstB_IS21
ERCC3_RAD25_C
VAPB_antitox
Motif
Other DBs
NCBI-ProteinID:
WWR13497
LinkDB
All DBs
Position
141244..144774
Genome browser
AA seq
1176 aa
AA seq
DB search
MNIMNQYISKSDAIQTLIKALDGEHQNVLLSGVTPSFYASLMQMLYENKRRPVVIMMQNL
YQAQRLYDQLVELMDEGLVRLFPMDEFITAEMLASSSELRIERMNTLSSIIEDPNRIIVT
HVAGAARFLPPKEVFQQADISLEVGECYDLDTLKRKLIELGYQSVRAVEHMGEFSVRGGI
LDVFPMTEENPLRIEFFDDEIDTIRYFTTDTQRSIKKVERAVIVPTFELVYSDQEIKAFE
SSIKDLLNKTLPLVDGEAREMLYARIYQDIEKIQNHQDLELMHKYISLLYKDPDTLLSYL
DNPLVIYIDYARVLENQEHMNEDALAWQEGAIENGKTVKGLNLYQPITTISVAHQLFLSE
HLGTLPNVELDQHVKLATKSVSEFHGQLEFFAKECKRLRENGATVFVAVSSVEARNNLAN
YLDELGVGVAFPTTIDEIREGSIHLICDCLAVGYELLEPHIVVYTDYEVHTKRKKSTAYK
SNFKEGKKMKDYNELQLGDYVVHVQHGIGQYIGIETLETNGARKDFLMIAYRGDDKLYVP
IDKIQMVQKYVGSEGAKPKINKLGTSEWEKTKSKVKKTVKDIADKLIKIYAKREHLPGYA
FAKDTIEQHAFENAFPYVETDDQLRAASEIKEDMEAPHPMDRLLIGDVGYGKTEVAMRAA
FKAVQDGKQVAYLAPTTILSKQHYESFVSRFRDFDVKVGLLNRYISVKEQQELLESIKSG
KINIVVGTHRILSKDVIFKDLGLLIIDEEQRFGVEHKEKIKEFKTEVDVLTLTATPIPRT
LQMSMIGIRSLSLIETPPMNRYPVQTYVLEEHDGVIRDAIERELARDGQVFYLYNRVSDI
EKRAAKIQKLVPDAVVEYAHGQMSKEQLEQTMADFEEKKFNVLVCTTIIETGIDIPNANT
LLISDAYRLGLSQLYQLRGRVGRSDRIAYAYCMYPRNKVLTENAEKRLQTIKEFTELGSG
FKIAMRDLAIRGAGDMLGAKQYGFIDTVGLDLYTQLLSEAVVHAREGSDFEVSSFEVPKV
EFDFPTKVDAYIPDFYISDESTKIEIYQKIKKITNDHSYNDIIDELIDRFGDFPDEVKYL
IDLTYLKNLTEGYIEKTKSTKNTIEFILKEEITQDINGQKLFEAVHKIGSMIRLAYKEGR
INIIFDLPVVKRLQWFEYALDLFKDFERFKNNVKKV
NT seq
3531 nt
NT seq
+upstream
nt +downstream
nt
atgaatataatgaatcagtatatttcaaagtcggatgcaatccaaactttgataaaggcg
ttagatggtgagcatcaaaacgttttacttagcggagtaactccgtctttttatgcgtca
ttaatgcaaatgttgtatgagaataaaagaaggcctgtagttattatgatgcaaaattta
tatcaggcccagcgtttgtatgatcagttagtggagttgatggacgaagggttggtccgt
ctttttccaatggacgaatttatcacagcggaaatgctagcttcaagttctgaattacgt
attgaaaggatgaatacattatcttcgattattgaggatcctaacaggatcatcgttact
catgtcgcaggtgctgcccgttttttaccgcctaaggaagtttttcaacaggcggatatt
tcattagaggttggtgagtgttacgatttagatacattaaaaagaaagctaattgaactt
ggctaccaatctgtacgtgccgtggaacatatgggagagtttagtgtgcgcggtggaatt
cttgatgtgtttccaatgacggaagaaaatccattacgtatagaattttttgacgatgag
attgacacgatacgctattttacaacggatacacaacgttcgataaagaaagttgagcgg
gctgtcattgttccaacctttgagttggtatattcggatcaggagattaaggcctttgaa
tcaagcataaaggatcttttgaacaaaacgttacctcttgtggatggggaagcacgagag
atgttatatgcgagaatttatcaagatatcgaaaaaattcaaaatcatcaggatttagaa
ttaatgcataaatatatttcgcttctatataaggatccggatactttattatcctattta
gacaatccgcttgttatttatattgattatgcccgtgttttggaaaatcaagagcatatg
aatgaagatgcgttagcttggcaagaaggcgcgattgaaaatggaaaaacagtcaaaggg
ttaaatctgtatcaacctatcacgaccatttcagtagctcatcagttatttttatctgaa
catcttggtacgttacctaatgtggaattggaccaacatgttaaattggcaacgaaaagt
gtatcggagtttcacggacaactagaattctttgctaaggaatgtaaacgtttaagagaa
aatggcgcgacggtttttgtggctgtttcgagtgttgaagcacggaataatttggcgaac
tatttggatgaattaggtgttggtgtagcattccctacaaccattgacgagattcgcgaa
gggtctattcatcttatttgtgattgcttggcggtaggatatgaactattagagccacat
attgttgtctacaccgattatgaggtccatacaaagcgtaagaaatctacggcgtataag
agcaactttaaagaaggaaaaaaaatgaaagattataatgaactacaactgggagattat
gtcgttcatgttcaacacggaattggtcagtacattggaattgaaacattagaaactaat
ggagcgcgtaaagactttttaatgattgcctatcgcggggacgataagctatatgttcct
attgataaaattcagatggttcagaaatatgtaggttccgagggagccaagccgaaaatt
aacaaattagggacatccgagtgggagaaaacgaaatctaaagttaagaagaccgttaaa
gatattgcggataagttgattaaaatctacgccaaaagggaacatcttccgggttacgct
tttgcgaaagacacgattgaacaacatgcctttgaaaatgcctttccatacgtggagact
gacgatcaattaagagctgcaagtgaaattaaggaagatatggaagccccacatccaatg
gatcgcttgttaattggggatgtaggttatggtaaaacggaagttgcgatgcgagcagcc
tttaaggccgttcaagatggtaaacaggttgcttatttggcacccacaaccattttgtct
aaacaacattatgaatcatttgtttcgcgctttcgggattttgatgtcaaggtgggctta
ctgaacagatatatttcagtaaaagaacaacaggaattgctagaaagtataaaaagtggt
aaaataaatatcgttgtcggaactcatcggattttatcaaaagatgttatttttaaagat
ttaggacttttgattattgatgaagagcaacgcttcggggttgaacataaggaaaaaatc
aaagagtttaaaactgaagttgacgtcttaacgctgactgcaacacccattccaagaaca
ttacagatgtcgatgattggaattagaagtttatcgctgattgaaactcccccgatgaat
cgttatcctgtacaaacttatgttttagaggaacacgatggggttatacgagatgcgatt
gagcgtgaattggcgagggatggacaagtattctatttgtataatagagtatctgatata
gagaagcgggctgcgaaaatacaaaaattagttccagatgcagttgtagaatatgcacat
ggtcaaatgagtaaagagcagcttgaacaaacaatggcagattttgaagaaaagaaattt
aatgttttagtttgtacaacgattattgaaacagggatcgatatacctaatgcaaataca
ctgcttatctctgatgcatatcgcctaggattatcacaactttatcagttaagagggcgt
gtgggtcgtagtgatcggattgcttatgcttattgtatgtacccacgaaataaggtgttg
actgaaaatgctgaaaaaaggttacagacaattaaggaatttactgaattaggatcaggt
tttaaaattgcaatgcgtgatttggcgatacggggagccggagatatgttaggtgcgaag
caatatgggtttattgacacggtcggattagatttatatacccaattattaagtgaagca
gtcgttcatgctagagaaggtagcgattttgaagtctcttcatttgaagtaccaaaggta
gagtttgactttcctacgaaagtcgatgcctatataccagacttttatattagtgatgaa
tcaacaaaaatagaaatttatcaaaaaattaaaaaaattaccaatgatcattcttataat
gatattatcgatgaattaattgaccgttttggagattttcctgatgaggttaagtattta
attgatttaacttatttaaaaaacttaacagaaggatatattgaaaaaacaaaatcgact
aaaaatacgatagaattcatattaaaggaagaaattacacaagatattaatggacagaag
ctatttgaggctgttcataagattggttcaatgattcgcttagcttacaaagagggaaga
atcaatattatttttgatttacctgttgtaaaaagattacaatggttcgaatatgcattg
gacctctttaaagattttgaaagattcaaaaataatgtaaaaaaggtataa
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