Turicibacter sp. KK003: VXM77_02030
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Entry
VXM77_02030 CDS
T10570
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
tuk Turicibacter sp. KK003
Brite
KEGG Orthology (KO) [BR:
tuk00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
tuk03009
]
VXM77_02030 (rlmD)
Enzymes [BR:
tuk01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
VXM77_02030 (rlmD)
Ribosome biogenesis [BR:
tuk03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
VXM77_02030 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
TRAM
Methyltransf_31
Methyltransf_25
TRM5-TYW2_MTfase
Methyltransf_15
Methyltransf_11
PrmA
MTS
Cons_hypoth95
N6_N4_Mtase
PCMT
RrnaAD
Methyltransf_12
N6_Mtase
Methyltransf_32
UPF0020
TPMT
Motif
Other DBs
NCBI-ProteinID:
WWR13715
LinkDB
All DBs
Position
412961..414334
Genome browser
AA seq
457 aa
AA seq
DB search
MTKKIVPVQKNEYYDVKIESLTHDGLGVARVDGFPVFVANALVGEEINMKVTLVKKTYAF
GRAVDYFVTSGERVKPECGIYKQCGGCQVQHLSYEGQLKMKHDTVVNHLKRIGHIEDANV
LPTIGMQNPSRYRNKTQVPFGYADGKVVAGFYQKRSHEIINMQSCLIQTDISDQIVETMR
QLCQELEIDPYNESLNLGVLRHVIVRVGFKTEEIMVTLVTRTHEIPNSELLIQRLVSKYP
KIKSIAQNVNPKVTNVIFGDETRILYGEPYIYDEMNGIRFAISPRSFYQVNPIQTETLYS
KAVEYAQLSGNEIVFDAYCGIGTITLFLAQHAKQVYGVEIIPEAIEDAKMNARLNGFENT
QFAVGKSEEIIPAWIENGIVPDVIVVDPPRKGCDRSLLDTMLEAAPDRIVYVSCDSSTLA
RDLRVLIDGGYKLEVVQPVDMFPQTAHIECVAKLVRA
NT seq
1374 nt
NT seq
+upstream
nt +downstream
nt
atgacgaagaagatagtgccggttcaaaaaaatgagtactatgatgtaaagattgaaagt
ttaacgcatgatggattaggtgtagcgcgtgtcgatggatttccagtgtttgtcgctaat
gcacttgtcggtgaagaaatcaatatgaaggtgacattagtaaaaaaaacgtatgccttt
ggccgtgcagttgattattttgtaacgagcggggaacgtgtcaaaccagaatgtggaata
tacaagcaatgtggtggatgtcaagttcaacatttaagttatgaaggacaacttaaaatg
aagcatgacacagtggttaatcatttaaaaagaataggtcatattgaagatgcaaatgta
ttaccgacaatcggaatgcaaaatcctagtcgataccgtaataagacgcaggttccattt
gggtatgcggatggaaaagtggtagcgggattctatcaaaaacggagccatgaaataatt
aatatgcagtcgtgtttaatccaaacagatatctcagatcaaattgtagaaacaatgaga
caattgtgtcaggaattagagattgatccgtataatgaatcattaaaccttggagtttta
cgtcatgttattgtacgcgtaggatttaaaacggaagaaatcatggtaacgctcgtgaca
agaacgcatgaaattccaaatagtgagttgcttattcaaaggctagtaagtaaataccct
aagattaaaagtatcgctcaaaatgtgaatcctaaagtcacgaatgttatttttggagac
gagacacgtattttatatggggaaccttatatttatgatgaaatgaatggaattcgtttt
gctatttcaccgcgttctttttatcaagtcaatccgattcaaacggagacattgtattca
aaagctgttgaatatgcccaattatctgggaatgagattgtctttgatgcatattgtgga
attggtacaattaccttattcttagcgcagcatgctaaacaggtgtatggtgttgaaatt
attcctgaggcaattgaagatgcgaaaatgaatgcccggttaaatggttttgaaaatacc
caatttgctgtaggaaagtctgaagaaattattcctgcatggattgagaacgggattgta
cctgacgttatcgttgttgaccctccacgtaaggggtgtgatcgatcattattagataca
atgttagaggcggcccctgatcgtattgtttatgtatcttgtgactcctcgacacttgct
agagacttgcgtgttcttatagatggaggctataaattggaagttgttcaacccgttgac
atgttccctcagacagcgcacattgagtgtgtagcaaaattagttagggcttaa
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