Turicibacter sp. KK003: VXM77_02960
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Entry
VXM77_02960 CDS
T10570
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
tuk Turicibacter sp. KK003
Brite
KEGG Orthology (KO) [BR:
tuk00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
tuk03009
]
VXM77_02960 (rlmD)
Enzymes [BR:
tuk01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
VXM77_02960 (rlmD)
Ribosome biogenesis [BR:
tuk03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
VXM77_02960 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
TRAM
Methyltransf_31
MTS
Methyltransf_25
Methyltransf_15
Cons_hypoth95
PrmA
TRM5-TYW2_MTfase
Methyltransf_12
Methyltransf_11
TPMT
Methyltransf_32
UPF0020
Methyltrans_SAM
Ubie_methyltran
Motif
Other DBs
NCBI-ProteinID:
WWR13887
LinkDB
All DBs
Position
622688..624079
Genome browser
AA seq
463 aa
AA seq
DB search
MKMSPLKVGQEFLVTIKRIGINGEGIGYYKKQAVFIPGTLVGEEVVATCTRVANGYAEAE
VVRIKRKSKHRVQPACEVYGQCGGCQLQHMSYQEQLRIKRDAVSQAIERYTSLDSDECDI
RPTMGMNDPYNYRNRAQMPVGYDEDGIMVGFYSMNSRELVNVTDCDVQYEEINKVINHAV
DLLDDYKVFAYAPKTRKGTARYIVVRRGFKTGEVQVTFVFANNDFKKMYSLAKDLMKYCP
DVKSVYVSINGEDTHEILGKELQHVAGEKFISDELGRFKFNLSPRAFYQLNPEQTVKLYN
QVKYAAALKGTEKVVDAYCGVGTIGQWVADKASEVRGVDITRQAINDAKENAKLNGLTNT
YYAVGKAEQIVPKWANDGFKPDVVIVDPPRTGLGEELIEMLKRVQPQTIVYVSCNPSTMA
KNLKELTKKYRVDYIQPIDMFPQTSHVECVVRLVRKNKPLKRK
NT seq
1392 nt
NT seq
+upstream
nt +downstream
nt
atgaagatgtctcctttaaaggttggtcaagaatttttagttaccattaaacgtatcggt
attaacggtgaaggaatcggctattataaaaagcaagccgtgtttattccaggaacacta
gtaggcgaagaggttgtcgcgacgtgtacacgcgtggcaaatggttatgcagaggctgaa
gttgttcgtattaagcgtaaatcaaagcatcgcgttcaaccggcgtgcgaagtttatggg
caatgtggtggatgtcaattacaacatatgtcttatcaagagcaattacgtattaaacgt
gatgctgtgtctcaggccattgagcgctatacaagtttagattcagatgagtgtgatatt
cgtccgacgatgggaatgaatgacccttataattatcgtaatcgcgcgcaaatgccggtc
ggttatgatgaagatggaattatggtcggattttatagtatgaactcacgcgagttagta
aatgtgacggattgtgatgttcagtatgaggaaattaataaggttattaatcatgcggtt
gatttattagatgattataaggtatttgcgtatgcaccgaagacgcgtaaaggaacggcg
cgctatattgtggttcgccgcgggtttaaaacgggtgaggttcaggtgacgttcgtgttt
gcgaataatgattttaaaaagatgtattcgttggcgaaagatttaatgaaatactgccct
gatgttaaatcagtgtatgtgagcattaatggagaagatacgcacgagattttaggaaaa
gagttgcaacatgtagcgggtgagaaatttatttcagatgagttaggacgatttaaattt
aatttatcaccacgtgccttttatcagttaaacccagaacaaacggttaaattatacaat
caagtgaagtatgcggcggctttaaagggaacagagaaagtcgttgatgcttattgtggg
gttggaacgattggtcaatgggttgcggataaagcaagcgaggttcgcggggttgatatt
acgcgtcaagcgattaatgatgcgaaggaaaatgcgaagttaaacggattaactaatacg
tattacgcagttggaaaggctgagcaaattgttccaaagtgggcgaatgacggattcaaa
ccggatgttgtgattgtggatcctccacgtacaggattaggggaagaattaattgaaatg
ttaaaacgcgttcaaccgcaaacgattgtctatgtgtcatgtaatccttcaacgatggcg
aaaaatttaaaagaattaacgaaaaagtatcgcgttgattacattcaaccgattgatatg
ttccctcaaacgtctcacgtggaatgtgtcgtacgtcttgttcgtaaaaacaaaccatta
aaacgaaaataa
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