Turicibacter sp. KK003: VXM77_08960
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Entry
VXM77_08960 CDS
T10570
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
tuk Turicibacter sp. KK003
Pathway
tuk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tuk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VXM77_08960
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tuk03019
]
VXM77_08960
03009 Ribosome biogenesis [BR:
tuk03009
]
VXM77_08960
Enzymes [BR:
tuk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
VXM77_08960
Messenger RNA biogenesis [BR:
tuk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
VXM77_08960
Ribosome biogenesis [BR:
tuk03009
]
Prokaryotic type
rRNA helicases
VXM77_08960
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
AAA_19
DpnII
SLFN-g3_helicase
AAA_30
SecA_DEAD
Relaxase_C
Motif
Other DBs
NCBI-ProteinID:
WWR12802
LinkDB
All DBs
Position
1832521..1833627
Genome browser
AA seq
368 aa
AA seq
DB search
MNFKSLGMSEPLVQILKKSGIKTPTAIQQECIPLIIADKDVIAQAQTGTGKTLAFLLPLF
ERISPESTKTEALIITPTRELALQITEQAEQLAKAKKLNVLAAYGGRNIGSQLNKLKKNI
HLIIATPGRLLDHLERKTIDLNHVKTVVIDEADQMLLMGFKNEVDQILRATPRNRQTLCF
SATMAPNVKKLAYYYTYSPVVVNIEPKKVTLDTIRQEVVETTDRQKFDRLAQALQEDNPF
LAIIFVRTKRRANELFAKMKKQKFNVQVIHSDIAQNKRERILKSFREADLQYLIATDVAS
RGLDISGVTHIYNYDVPETPETYIHRIGRTGRAGEDGYTCMFVAPKDNLEFNMIERKLRR
NLPRRTFK
NT seq
1107 nt
NT seq
+upstream
nt +downstream
nt
atgaattttaaatcattaggaatgagtgaacccctcgttcaaattctaaaaaaatcagga
attaaaacaccaacagctattcaacaagaatgtattccattaattatcgctgataaagat
gtgattgcccaagcccaaacaggaaccgggaaaacattagctttcctactcccgctattt
gaaagaatttcgccagaatctactaaaacggaggctttaattattactcctacacgtgaa
ttagccttgcaaattactgaacaagccgaacaactagcaaaagcaaaaaaactcaatgtc
cttgccgcatacggaggaagaaacattggttcccaacttaataaattgaaaaaaaatatc
catttaattatcgcaacgccgggacggctcctcgaccacttagagcgaaagaccattgat
ttaaatcatgttaaaaccgtggtcattgatgaggcggatcaaatgttactgatgggattt
aaaaatgaggtagatcaaattttaagagcgaccccgcgtaaccgtcaaacgctttgtttc
tcagcaacaatggctcctaatgttaaaaagctagcttactactatacctattctccggtt
gtcgtaaacattgagcctaaaaaagtgacgcttgatactatccgccaagaagtcgtcgaa
acgactgatcgacaaaaatttgatcggctggctcaagcgctccaagaagataaccccttt
ttagctatcatcttcgtgcggaccaaacgacgtgccaatgagctctttgcgaaaatgaaa
aaacaaaaatttaatgttcaagtcattcatagtgatattgcccaaaataaacgggaacga
attttaaaatcatttcgtgaggctgatttacagtatctcattgcaactgatgttgcatcc
cgtggattagatatttctggtgtcacacacatttataactacgatgtccctgaaacacca
gaaacttatattcatcgaattgggagaacagggcgcgcgggtgaagacggatatacttgc
atgttcgtcgccccaaaggataacttagaattcaacatgattgagcgaaaattacgccgc
aacttaccacgacgaacatttaaataa
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