Turicibacter sp. KK003: VXM77_11605
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Entry
VXM77_11605 CDS
T10570
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
tuk Turicibacter sp. KK003
Pathway
tuk03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
tuk00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
VXM77_11605 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tuk03021
]
VXM77_11605 (rpoC)
03400 DNA repair and recombination proteins [BR:
tuk03400
]
VXM77_11605 (rpoC)
Enzymes [BR:
tuk01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
VXM77_11605 (rpoC)
Transcription machinery [BR:
tuk03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
VXM77_11605 (rpoC)
DNA repair and recombination proteins [BR:
tuk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
VXM77_11605 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
RPOC_hybrid
ApbA_C
Motif
Other DBs
NCBI-ProteinID:
WWR13286
LinkDB
All DBs
Position
complement(2381262..2384990)
Genome browser
AA seq
1242 aa
AA seq
DB search
MVDVNKFKYMKIGLASSDTIRKWSYGEVKKSETINYRTLKPEKDGLFCERIFGPQKDCEC
ACGKYKRIRHEGIVCDRCGVEVTVAKVRRERMGHIELAAPVAHIWYVKGIPSRMGLLLNM
SPRELEEVIYFVNYVVIDPGKTDLVKQKVLTEKEYREVYEKWGNEFEVGMGAEAIKKLLE
SLDLDKLAKELRSELKVAQGQKRGKVIKRLEVVESFRNSGNRPEWMILDVLPVIPPELRP
MVQLDGGRFATSDLNDLYRRVINRNNRLIRYLEIGAPNIIINNEKRMIQESVDALIDNGR
RGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPDLKMYQCGLPKE
MALELFKPFVMKELVERDLAQNIKSAKKMIERMDDALWDVVEDVIREHPVLLNRAPTLHR
LGIQAFEPKIVEGRAIRLHPLVTTAFNADFDGDQMAVHVPLSQEAQAEARLLMLAANNIL
NPKDGKPVVTPSQDMVLGNYYLTMEEVGAIGEGNIYKDTNELMMAYANGYVTLHSRIALN
ARALNNMTFTEDQNNKYIITTLGKVIFNGILPKTFPYLNEPTMKNLQGATPSQYFVEKGT
DIKAYLSDVKIVSPFKKKFLGDIISEVFRIYKTTETSRMLDRLKDLGFKYSTVAGISVGV
ADVVVSSKKKDLLKQGDDKVAQIQEFYNRGLLTDDERYRLVIDVWAKVKDEIQHVLMNEL
PADNHIYMMSDSGARGNASNFTQLAGMRGLMANPSGKTIELPIKSSFREGLTVTEFFIST
HGARKGLADTALKTADSGYLTRRLVDVAQDVIVREDDCGTDKGQYITELKQRGQTVETLF
DRIVGRYTAKPIYHPVTKEKIADRNVYISDELGKIIVDAGIEGVDIRTIYSCNAQKGVCK
KCYGQNLATGKEVEVGEAVGIMAAQSIGEPGTQLTMRTFHTGGVAGADITQGLPRIQELF
EARNPKGRAIIAEIDGVITTIKANTKNRYEITLTNKLESRNYLLPYGVQPLVSEGDEVLA
GDMLTEGSIDPKELLRVKDVAAVQAYILKEVQNVYRAQGVELSDKHIEIMVHQMMKKVKV
IDGGDTDILPGSLIDITHYTRVNAAAIQRGKRPAVGIPTILGITKASLETESFLSAASFQ
ETTRVLTDAAIKGKVDELIGLKENVIIGKLIPAGTGVLREDHILPVHKNEDELEDDVLPY
ELEMSGISNSESQIDISLEDDLDELDIELDFDETDFLDTDEE
NT seq
3729 nt
NT seq
+upstream
nt +downstream
nt
ttggtagatgttaacaagtttaaatatatgaagattggtttggcatcttcggatactatt
cgtaaatggtcttatggagaggttaaaaaatctgagacgattaactatcgtacattgaaa
cctgaaaaagatggattattctgtgagcgtattttcggtccacaaaaggactgtgagtgt
gcttgcggtaaatataaaagaattcgccacgaaggaatcgtttgtgatcgctgtggtgtt
gaagtaacagtagcaaaagttcgacgtgaacgtatggggcacatcgaactagctgctcct
gtagctcatatttggtatgtaaaaggaattccaagtcgtatggggctattattaaatatg
tctccacgtgaattggaagaggtaatttattttgtaaattatgttgtaattgatccaggt
aagactgatttagtaaaacaaaaagttttaactgaaaaagaataccgtgaagtgtatgaa
aaatggggtaacgaatttgaagtaggaatgggtgcagaggccattaagaaactactagaa
tcgttagacttagataaattagcaaaagaattacgctctgaattaaaggttgcacaggga
caaaagcgtgggaaagtaatcaaacgtcttgaggtagtagaatcattccgtaactcagga
aatcgtcctgagtggatgattttagacgttttaccagtaataccgcctgaattacgtcca
atggttcaattagatggaggacgtttcgcaacatctgacttaaatgatttatatcgtcga
gttattaatcgtaataatcgtttaattcgttatttagaaatcggtgccccgaatatcatt
attaataatgaaaagcgtatgatccaagagtcagtggatgcattaattgataatggacgc
cgtggtcgaccagttactgggcctggaaatcgcccattaaaatcactttcacatatgtta
aaaggtaaacaaggacgtttccgtcaaaacttattaggtaaacgtgttgattactctgga
cgttcagttatcgttgtaggaccagatttaaaaatgtaccaatgtggtttacctaaagaa
atggccctggaattatttaaaccgttcgtaatgaaagagcttgttgaacgtgatttagca
caaaacattaaaagtgctaagaagatgattgaacgcatggatgatgcgttatgggatgtt
gttgaagatgttattcgcgaacatccagtattattaaaccgtgcccctacgttacaccgt
ttaggtattcaggcatttgaacctaaaattgttgaggggcgtgccatccgtttacatccc
cttgttactacagcattcaatgccgattttgatggggaccaaatggcggttcacgttcca
ttatctcaagaggctcaagccgaggcacgtttactcatgcttgctgccaataatatctta
aaccctaaggatggtaaaccagtagtaactccgtctcaggatatggtactaggaaactat
tacttaacgatggaggaagttggagccatcggtgaagggaatatttataaagatactaat
gagcttatgatggcttatgcaaatggttatgttacattacattctcgtattgcattaaat
gcaagagcattaaataatatgactttcacagaagatcaaaataataaatacattatcaca
actttaggtaaggtaatatttaatgggatccttcctaaaacattcccttatttaaatgaa
cctacaatgaaaaatttacaaggggctactccttctcaatatttcgttgagaaaggaact
gatatcaaggcgtatttatcagacgttaaaattgtatccccatttaaaaagaaattctta
ggtgatattatttcggaagttttccgtatttataaaacgacagaaacgtcacgtatgttg
gaccgactaaaagatttaggattcaagtattcaactgttgcaggtatttctgttggtgtg
gcggacgtagtcgtatcttcaaagaaaaaagatttattaaaacaaggtgacgataaagtt
gcgcagatccaagagttttataatcgtggattgttaactgatgatgaacgttatcgttta
gttatcgatgtttgggcaaaagtaaaagacgagattcaacatgtattaatgaatgaatta
ccggcagataatcatatttatatgatgagtgattctggggcccgtggtaatgcctcaaac
tttactcagttagctggtatgcgtggattaatggccaacccatctggtaaaacaatcgaa
ttaccaattaagtcttcgttccgcgaaggtttaactgtaaccgagttcttcatctctacc
catggtgcgcgtaaagggttagccgatacggcattaaagacagccgactcaggatactta
acacgtcgtttagttgacgttgcacaagatgttattgtacgtgaagatgactgtggaacg
gataaaggacaatatattactgaattaaaacaacgtggacaaactgttgaaactttattt
gaccgtattgtgggacgttatacggctaagccaatctaccatccagtaactaaagaaaaa
attgctgatagaaatgtttacatttcagatgaacttggaaaaatcatagttgatgctgga
atagagggtgtggatatccgtacaatttattcatgtaatgctcagaagggtgtatgtaaa
aaatgttacggtcaaaacttagcaactggtaaagaggttgaggtaggggaagctgtaggt
attatggcggcccaatcaatcggtgaaccaggtactcagttaacgatgcgtacattccat
actggtggggtagccggagccgatattacacaaggtttacctcgtattcaggagttattt
gaagcacgaaatccaaaagggcgtgctattattgccgagattgatggggtaattactaca
attaaggctaatactaaaaatcgttatgagattacattaacaaataaattagaaagtcgt
aattatttacttccttatggtgttcaacctcttgtttctgaaggagacgaggttttagcc
ggagatatgttaacggaaggttcaattgatccgaaagaattactacgcgttaaggatgtc
gctgccgtgcaagcgtatattttgaaagaagttcaaaatgtatatcgtgcgcaaggggta
gaactatctgataagcatatcgagatcatggttcatcaaatgatgaaaaaggtaaaagtt
attgacggtggagatacggatattttaccaggatcgttaattgatattacgcactatact
cgcgttaatgcagcggcaattcaacgtggtaaacgtccagcagtaggtattccaacaata
ttaggtattacaaaggcatctcttgaaacggaatcattcttatcagctgcttcattccag
gaaacaacacgcgttcttactgatgcggcaatcaaaggtaaagtggatgaattaatcgga
ttaaaagagaatgttatcatcggtaaattaattcctgcgggtactggtgtattacgcgaa
gaccatatcttacctgttcataaaaatgaggatgaattagaagatgatgtattaccttac
gaattagaaatgtcaggaatttctaattcagaaagtcaaattgatatttcattagaagat
gatttagacgaattagatatagagcttgattttgatgaaacagattttttagatactgat
gaggaataa
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