Tumebacillus avium: CBW65_00635
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Entry
CBW65_00635 CDS
T04874
Name
(GenBank) DNA-formamidopyrimidine glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
tum
Tumebacillus avium
Pathway
tum03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
tum00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
CBW65_00635
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tum03400
]
CBW65_00635
Enzymes [BR:
tum01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
CBW65_00635
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
CBW65_00635
DNA repair and recombination proteins [BR:
tum03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
CBW65_00635
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
NFACT_N
Auto_anti-p27
Zn_ribbon_6
Zn_Ribbon_1
Zn_ribbon_IS1595
DZR
zf_Rg
Zn_ribbon_3
Zn_ribbon_SprT
Zn_ribbon_TFIIB
Zn_Ribbon_TF
RNHCP
Motif
Other DBs
NCBI-ProteinID:
ARU59713
UniProt:
A0A1Y0IJV2
LinkDB
All DBs
Position
complement(106696..107532)
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AA seq
278 aa
AA seq
DB search
MPELPEVETVRRGLEALVLGKTIDHVTVSLPRIIRMPDDVQQFALMLQGHTIDAVERRGK
YLLLGIGPYTLVSHLRMEGRYGIYRSDEPMEKHTHVIFHFTDGTELRYKDVRQFGTMDLL
PRGEYALLPGLASLGPEPLAESFTADVLQTALKNRRSGKIKVLLLDQTFVAGLGNIYVDE
VLFQSGIHPEASGPDLQSEQIERLHAAIVAVLAQSVELGGSSVKSYVNGYGQEGGMQHLL
KVYGHEDNPCPNCGTEIAKTRIGGRGTHFCPSCQPLDK
NT seq
837 nt
NT seq
+upstream
nt +downstream
nt
atgccggaattgccggaggttgagaccgtccgccgggggctggaagcgctggtcctcggc
aaaacgatcgatcatgtgacggtgagcctgccgcgcatcattcggatgcccgatgatgtg
cagcagttcgccctcatgctgcaaggccacaccatcgacgcggtggagcgccgcggcaaa
tacctgctgcttggcatcgggccgtacacgctggtctcgcacctgcgcatggaaggccgc
tatggcatctaccgctcggacgagccgatggagaagcacacgcacgtcatcttccatttc
accgatggcacggaactgcgctacaaagacgtgcgccagttcggcacgatggatctgctt
ccgcgcggcgaatacgccttgctgcccggactggcctcgcttggcccggagccgctggcc
gaatcgtttaccgcagacgtcctgcagacggcgctgaaaaaccgccggagcggcaagatc
aaagttttgctgctcgatcagacatttgtggccgggcttggcaatatctatgtagatgag
gtgctctttcaatcgggcatccacccggaagcgagcggacccgacctgcaaagcgaacag
atcgaacgtttgcatgcggcgatcgtcgcggtcctcgcccagtcggtggagctcggcggc
tcctcggtgaagtcatacgtaaacggctacggacaagagggcggcatgcagcatctcctc
aaagtctacggccatgaagacaacccgtgccccaactgcggcacggagatcgccaagacc
cgcatcggcgggcggggcacgcacttctgcccgtcgtgtcagccgctggacaagtag
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