Tumebacillus avium: CBW65_05335
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Entry
CBW65_05335 CDS
T04874
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
tum
Tumebacillus avium
Pathway
tum03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tum00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CBW65_05335
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tum03021
]
CBW65_05335
03019 Messenger RNA biogenesis [BR:
tum03019
]
CBW65_05335
Transcription machinery [BR:
tum03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
CBW65_05335
Messenger RNA biogenesis [BR:
tum03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
CBW65_05335
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
AAA_22
AAA
NACHT
ATPase_2
AAA_25
S1CSD-TOTE-2
DUF6417
Mor
Motif
Other DBs
NCBI-ProteinID:
ARU63797
UniProt:
A0A1Y0ITP5
LinkDB
All DBs
Position
complement(1174700..1176013)
Genome browser
AA seq
437 aa
AA seq
DB search
MIVGERALHNIAELELMKLTELYKLAKQFEIPYYGTLKKRELIFAILRAQAEVEGFMFAE
GVLDIMQDGYGFLRPVGYTPSGEDIYVAASQIRRFDLRTGDRVSGKVRKPKENERYFGLL
QVEAVNSVSPEVAAERIHFPALTPLFPTRKFTMETAAEKYSTRIIDLLTPVGFGQRGLIV
APPKAGKTMLLKEIANSITTNHPEVELFVLLIDERPEEVTDMQRSVNAEVVASTFDELPE
NHIKVSELVLERAMRLVEHGKDVVILMDSITRLARAYNLVIPPSGRTLSGGIDPAALHRP
KRFFGAARNIEEGGSLTILATALVDTGSRMDDVIYEEFKGTGNMELQLDRRLAEKRIFPA
IDIRKSGTRREELLLSQDHLDKIWAMRKSMSDNPDFTDIFLKTLKKTKTNEDFLATIEGS
KEAKQLNKEEAKGTDAR
NT seq
1314 nt
NT seq
+upstream
nt +downstream
nt
atgattgtaggtgaacgtgctttgcacaatatcgcagagttggaactgatgaagctgacc
gaactgtataaactggccaaacagttcgagattccttattacggcacgctgaaaaaacgc
gagctgatcttcgccatcctccgcgcccaggcggaagtcgaagggtttatgtttgcggaa
ggcgtgctcgacatcatgcaggacggttacgggttcctgcgtcctgtcggctatacaccg
tccggcgaagacatctacgtcgccgcttcgcagatccgccgctttgacttgcgcaccggc
gaccgcgtctccggcaaagtgcgcaaaccgaaagaaaacgagcgctactttggcctgctg
caggtcgaagcggtgaacagcgtgtccccggaagtggcggcggagcgcattcatttcccg
gcgctgaccccgctgttcccgacccgcaagttcacgatggagacggcagcggagaaatat
tcgacccgcatcatcgacctgctgaccccggtcggcttcggccagcgcggtctgatcgtc
gcgccgccgaaagcgggcaaaacgatgctgctcaaggaaatcgccaacagcatcaccacc
aaccacccggaagtggagctgttcgtgctgcttatcgacgagcgcccggaagaagtcacc
gacatgcagcgctcggtcaacgccgaagtggttgcttcgacgtttgacgagctgccggag
aatcatatcaaagtctccgaactggtgctggaacgcgcgatgcgtctcgtcgagcacggc
aaagacgtcgtgatcctgatggactcgatcacccgcctcgcccgcgcttacaacctcgtc
atcccgccgtccggccgcaccttgtccggcggtatcgacccggctgcgctgcaccgcccg
aagcgctttttcggcgcggcgcgcaacatcgaagaaggcgggtcgctgaccatcctcgcc
accgcgctggtcgacaccggctcgcggatggacgatgtgatctatgaggagttcaaaggc
acgggcaacatggagctgcaactcgaccgccgcctggccgagaagcgcatcttcccggcg
atcgacatccgcaaatcgggcacgcgccgcgaagagctgctcctctcccaggatcacctc
gacaagatctgggcgatgcgcaagtcgatgagcgacaacccggacttcaccgacatcttc
ctcaagacgctcaagaaaacgaaaacgaacgaggatttcctcgccacgatcgaaggatcc
aaggaagcgaagcagttgaacaaagaggaagcaaaagggacggacgcacgttaa
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