Tumebacillus avium: CBW65_07735
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Entry
CBW65_07735 CDS
T04874
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
tum
Tumebacillus avium
Pathway
tum03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tum00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CBW65_07735
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tum03400
]
CBW65_07735
Enzymes [BR:
tum01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CBW65_07735
DNA repair and recombination proteins [BR:
tum03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CBW65_07735
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
DEAD
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
Cas3-like_C_2
UB2H
RecG_dom3_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ARU60988
UniProt:
A0A1Y0IKF4
LinkDB
All DBs
Position
1668856..1672401
Genome browser
AA seq
1181 aa
AA seq
DB search
MQSLVRILSSDGDYLRTVQNCQDGIRDQLITGLTGSAQHLWLAGIRGSLARPLLIVTHSM
GRAQQVFEDLLELLPGEEIRLFPNREMGYADVLAYSPELASSRLSVLESLVRGENFITIA
PIAALHETLTSPHEFLQAGKTLQVGDEIEINDLAAHLAYLGYERVEMVESKGEFSVRGGI
IDVFPLTRDEAVRIELFDVEVDSIRTFDPADQRSQGKIDKVSFWPIREVIAPPARIQAAG
TELQKRLETHLAKLQNAEVAEKLRENMGADLDQMEQGNWFPNLHRYFELIDPEPFNLLRY
VRQDTVFIYDEPSRLKESIKALEKEDLENITTALEYGELLPGLVAEKKRNNIFTDKSRTK
LMFSLFTRAVPGITPQAISNVDTRSMQNFHGQMNVLKSELERWAKLSYQVVFLAATEERA
ERLHRVLEDYKMRADLLQDWDGARRGPLILIGNLATGFELSSLRLAVITETEVFTNKKKT
RKMKTLSDAQKIKSYQDLKVGDYVVHVNHGIGKYMGISTKEILGIHKDYLHIKYKGKDEL
FVPVEQIDLVQKYIGQEEKEPKIYSLGGSEWQRVRSKVQSAVQDIAQDLIKLYAERQATP
GHKFTEDTPWQREFEAMFPYNETDDQIRCIKEIKKDMEMTRPMDRLLCGDVGYGKTEVAI
RAAFKAVMDGKQVAVLVPTTILAQQHFQTFKERCAGFPVNVELVSRFRSKGQITEVTKGI
KNGSVDIVIGTHRLLSKTMDFKDLGLLIIDEEQRFGVSHKEKLKQLRTNVDALTLTATPI
PRTLHMSMIGVRDLSVIETPPENRFPVQTFVVEQQDGIVREAIERELGRGGQVYYLFNKV
NGIQEMANHLKQLVPDAKVLVGHGQMPEEELERTMLDFLQGDADVLVSTTIIETGLDVPN
VNTLIVHDADHLGLSQLYQLRGRVGRSNRIAYAYFTYQRNKVLTEVAEKRLQAIKEFTEL
GSGFKIAMRDLSIRGAGNLLGAQQHGFIASVGFDLYSQMLSEAIEDLKEGVEKVEKLPDP
TVELSVDAYIPTTYITDAMQKIEIYKKFVAARTLEDVRDLEEEVEDRFGDIPVEVRNLLC
VSRLKANAIRYGMTEIKQTPQGDVIIRLQEDQSKKIDGEKLFSLTREFPNRMKLTAQQQI
VITLKVKGLKEAELLQMLEKFMDVYQIVPKREQDAVDNMAL
NT seq
3546 nt
NT seq
+upstream
nt +downstream
nt
gtgcaatctttagttcgaattttaagttcggatggcgattatctgcgcaccgtgcagaat
tgtcaggacggcatccgcgaccaactgatcacaggcctcaccggttcagctcagcatctc
tggcttgcagggattcggggctctttggcgcgtccgctcctgatcgtcacccacagcatg
ggccgcgcccagcaggtgtttgaagacctgctggaactgctgccaggcgaggagatccgc
ctcttccccaaccgggaaatggggtacgcggatgtgctcgcctactcgccggagctggca
tcgtcccgcctgtcggtgctggagtcgctggtgcgcggggagaattttatcaccatcgcc
ccgatcgccgcgctccatgaaacgctgacctctccgcacgagtttttgcaagccggcaag
accttgcaggtcggcgacgagatcgagatcaacgacctcgccgctcacctcgcctacctg
ggctatgagcgcgtggagatggtcgagtccaaaggcgaattttctgtgcgcggcggcatc
atcgacgtctttccgctgacccgtgacgaagcggtgcgcatcgagctgttcgacgtcgaa
gtcgactcgatccgcacgttcgacccggccgaccagcgctcacagggcaagatcgacaaa
gtgtcgttctggccgatccgcgaagtgatcgcgccgccagcgcgcattcaggcggcaggc
accgagctgcagaagcgcctcgaaacgcacctcgcgaagctccaaaacgccgaagtggct
gagaagctgcgcgaaaacatgggcgcagacctcgaccagatggagcagggcaactggttc
cccaacctgcaccgctatttcgagctgatcgatccggagccgttcaacctgctccgctat
gtgcgccaggacaccgtgtttatctatgacgagccgagccgtttgaaagaaagcatcaaa
gcgctggaaaaagaggacttggaaaacatcacaaccgccctcgaatacggcgaactgctg
cccggcctcgtcgcggagaagaagcgcaacaacatcttcaccgacaagagccgcaccaag
ctgatgttttccctgttcacccgcgccgtgcccggcatcactccgcaggcgatcagcaac
gtcgacacccgttcgatgcaaaatttccacgggcagatgaacgtgctgaagtccgaattg
gaacgctgggcgaaactgtcttaccaagtcgtctttttggcggcgaccgaagagcgggcc
gagcgcttgcaccgcgtgcttgaagactacaagatgcgcgccgacctgctgcaggactgg
gacggtgcgcggcgcggtccgttgattctgatcggcaacctcgcgaccggctttgagctg
agttcgctgcgccttgccgtgatcaccgagacggaagtgttcaccaacaaaaagaaaacc
cgcaagatgaagacgctgtctgacgcgcagaagatcaagtcctaccaggacctgaaagtc
ggcgactacgtcgtccacgtcaaccacgggatcggcaaatacatggggatctcgaccaaa
gagatcctcggcatccacaaagactatctgcacatcaaatacaaaggcaaagacgagctg
tttgtccccgtcgagcagatcgacctcgtccagaaatacatcggtcaggaagagaaagag
cccaagatctactcgctgggcggctcggaatggcagcgcgtgcgcagcaaagtgcagtcg
gcggtgcaggacatcgcgcaggacctgatcaagctctatgcggagcgccaggccacgccg
gggcacaagttcacagaagacacgccgtggcagcgcgagtttgaagcgatgttcccgtac
aacgagacggacgatcagatccgctgtatcaaagagatcaagaaagacatggagatgact
cgcccgatggaccgcctcttgtgcggcgatgtcggctatggcaaaacggaagtcgccatc
cgcgccgccttcaaagcggtgatggacggcaagcaggttgcggtgctggtgccgacgacg
attttggcgcagcagcatttccagaccttcaaagagcgctgtgccggcttcccggtcaac
gtcgagctggtctcccggttccgttccaaggggcagatcaccgaagtgaccaaaggcatc
aaaaacggctcggtcgacatcgtgatcggcacgcaccgcctgctgtcgaaaacgatggat
ttcaaagacctcgggctgttgatcatcgacgaggagcagcgatttggcgtctcgcacaaa
gagaagctgaagcagctgcgcacaaacgtcgatgccttgaccttgacggcgacgccgatt
ccgcggaccttgcacatgtcgatgatcggcgtgcgcgacctgtctgtgatcgagacgccg
ccggagaaccgtttcccggtgcagacgtttgtcgtcgagcagcaggacgggatcgtccgc
gaggcgatcgaacgggaactggggcgcggcgggcaggtatactatctgttcaataaggtc
aacgggattcaggagatggccaatcatctgaagcagctcgtgccggatgcgaaagtgctg
gtcggacacgggcagatgccggaggaggaattggagcggacgatgcttgatttcctgcag
ggggatgcggatgtgctggtgtcgacgacgatcatcgagaccggccttgacgtgccgaac
gtgaacacgctgatcgtgcatgacgccgaccacctcggcctgtcgcagctctaccagctg
cgcgggcgcgtcgggcgttccaaccgcattgcgtacgcttattttacctaccagcgcaac
aaagtattgaccgaagtggccgagaagcgcctgcaggcgatcaaggagttcaccgagctt
ggctccggcttcaagatcgccatgcgcgacctgtcgatccgcggcgcaggcaacctgctg
ggtgcgcagcagcacggcttcatcgcgtcggtcggttttgacctgtattcgcagatgctg
tcggaggcgatcgaggatctcaaagaaggcgtggaaaaggtggagaagctgcccgatccg
acggtggaactgtcggtcgatgcctacatcccgacgacgtacatcaccgatgcgatgcag
aagatcgagatctacaaaaagttcgtcgccgcccgcaccttggaagacgtgcgcgacctg
gaggaagaagtggaagaccgctttggcgacatcccggtcgaagtgcgcaacctgctctgc
gtttcgcgcctcaaggccaatgcgatccgctacggcatgacggagatcaagcagaccccg
caaggcgatgtgatcatccgcctgcaagaagaccaaagcaagaaaatcgacggggagaag
ctcttctcgctgacccgcgagttccccaatcgcatgaagctcaccgcccagcagcagatc
gtcatcaccttgaaggttaaaggcctcaaagaggcagagttgctgcagatgctggagaag
ttcatggacgtctaccagatcgtgcccaagcgcgagcaggatgcggtcgacaacatggct
ttataa
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