Thiothrix unzii: J9260_09390
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Entry
J9260_09390 CDS
T07174
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
tun
Thiothrix unzii
Pathway
tun03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tun00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
J9260_09390 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tun03400
]
J9260_09390 (mfd)
Enzymes [BR:
tun01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
J9260_09390 (mfd)
DNA repair and recombination proteins [BR:
tun03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
J9260_09390 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
Cas3-like_C_2
AAA_30
SWI2_SNF2
Motif
Other DBs
NCBI-ProteinID:
QTR51968
UniProt:
A0A975F6L2
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All DBs
Position
1881453..1884926
Genome browser
AA seq
1157 aa
AA seq
DB search
MSVLLKPQFPAAPNGHVRWGQLYGASLDWLIAQSAQGFDGLTLLVVPDVHTAYQMDSALQ
FFAPEIPRHIFPDWETLPYDVFSPHEDIISERLKTLATLQNLKRGILIVPATTLLHRLAP
TSYVHGHTFVVRKGSPLNIDKLRKQLEEAGYRNVSQVMAHGEYATRGSLVDLFPMGSHTP
YRIDLFDEEIDSIRTFNPETQRTDVVVDSIELLPAREFPLDEAGIRTFRQNYRAQVEGDL
TRSRIYEGVSQGKPPAGIEYYLPLFFEHTATLFDYLPKKTLLVLAEGMDAAVKTFWETVE
YRYEQRRHDIERPLLAPEKLFLTAEMLGSWIGDYPRVEVQRFKEVEENPPQSPFFKGGSQ
NALNYPIAALPSLLIHARQEQPLFLLFNFLKDLKGRVLFTAESAGRREAFLTLLKDNGIA
VKTLETWQDFLGSKAEMAVTVAPLENGFWLPDAKIAVIPENLLHGVQIQQQRRRRKATRD
ADAIIRNLTDLNEGAPVVHEEHGVGRYLGLETVTAGGVTAEYLLIEYANHDKLYVPVAAL
HLVSRYTGADPEHAPLHRLGNEQWDKARQKAAEKARDVAAELLDIHARRAAQQGHSFPFD
DNDYRLFAGAFPFEETPDQALAIENVIKDMRSAQPMDRVVCGDVGFGKTEVAMRAAFVAA
NAGKQVAMIAPTTLLAQQHLNNFRDRFADWPFNIESLSRFKTGKETSKALEALASGKIDI
VIGTHKLLQDDVHFKQLGLVIIDEEHRFGVRDKEQMKKLRANVDMLTMTATPIPRTLNMS
LSGLRDLSIIATPPTQRHAIKTFVCEWNKTIIQEACARELSRGGQVYVLHNEVKTIDKVE
QELSAMLPGVTVRHAHGQMRANELENIMSDFYHQRFQILIATTIIESGIDVPTANTILIN
RADKLGLAQLHQLRGRVGRSHHRAYAYLIAPPKSALTPDAVKRLEAIESLEELGVGFTLA
THDLEIRGAGELLGEGQSGQIQEIGFNLYNDLLERAVKALKSGKVPELSATSRRTTVELG
APALIPDDYLPDVHARLILYKRIASAESQAALDELRVEMIDRFGLLPEPTKTLFSVTRVK
LLAQELGIRKLDMHVKGGRIIFDDKPNIDPMKVITLIQKRPWVFKLDGQDKLRFEVELAT
VEEREEWVVKLMGEIGG
NT seq
3474 nt
NT seq
+upstream
nt +downstream
nt
atgtctgtattgctcaagccccaattccccgccgctcccaacggtcacgtccgctggggg
caattgtacggcgcatccctcgactggctgattgcccaatccgcgcaaggctttgatggc
ttgaccctgctggtcgtgccggatgtgcataccgcttaccagatggattccgcgctgcaa
tttttcgccccggaaatcccgcgccacattttccccgactgggaaaccctgccctacgat
gtattttcaccgcacgaagacatcatttccgaacgcctgaaaacgctggcgacgctgcaa
aacctaaagcgcggcatcctgattgtgccagccaccacgttgttacatcgccttgcgccg
accagctatgtgcatggacataccttcgtggtacgcaaaggctcaccgctcaatatcgac
aaattgcgcaagcaactcgaagaagcaggctaccgcaacgtcagtcaggtgatggcgcat
ggtgaatatgcgacccgtggctcgctggtcgatttgttcccgatgggcagccatacgccg
tatcggattgatttgtttgacgaggaaattgattcgatccgcaccttcaacccggaaacg
cagcggacagatgtggtggtggatagcatcgaattgctgcctgcgcgggagtttccgctg
gatgaagccggtatccgcactttccgccaaaactaccgggcgcaggttgagggggatttg
acccgcagccgcatttacgaaggcgtgagtcagggcaagccgccagcggggattgagtat
tacttgccgctgttctttgaacataccgcgacgttgtttgattacttgccgaagaaaacg
ctgctagtactcgctgaaggcatggatgcagcggttaagacgttctgggagacggtggag
tatcggtatgagcaacggcggcatgatattgagaggccgttgcttgcaccggagaagctg
tttttgacggcagagatgttggggagttggattggggattatcctcgggttgaggtgcag
cgatttaaagaggtggaagaaaatccccctcaatccccctttttcaaagggggaagccaa
aacgcgctgaactaccccatcgccgccctcccctcgctcctcatccacgcccgccaagaa
cagcccctattcctgctgttcaacttcctcaaagacctgaaagggcgcgtgctattcacc
gccgaatccgccgggcggcgtgaagccttcctcaccctgctgaaagacaatggcattgcg
gtcaaaacgctggaaacttggcaggatttcctcggtagcaaagccgaaatggcggtcacg
gtcgcgccgctggaaaacggtttctggctgcccgatgcgaagattgcggtcattcccgaa
aacctgcttcacggcgtgcaaatccagcagcaacgccgtcgccgcaaagctacccgcgat
gctgatgcgattatccgcaacctgaccgacctcaacgaaggcgcacccgtggtacacgag
gaacacggggtcgggcggtatctggggctggaaacggtcacagcgggcggagtgacggcg
gaatatttgctgatcgaatacgccaaccacgacaagctgtacgttcccgtcgccgcgctg
catctggtcagccgttacacgggtgctgacccggaacacgcgccgttgcaccgcctcggc
aatgagcagtgggacaaggcgcggcaaaaagcagcggaaaaagcgcgggatgtggcggcg
gaattgctcgacatccacgcccgccgtgccgcgcagcaggggcatagcttcccgtttgac
gacaacgattatcgcctgtttgcgggcgcgttcccgtttgaggaaaccccggatcaggca
ctggcgattgaaaacgtgatcaaggatatgcgttccgcgcagccgatggatcgggtggtg
tgcggcgacgtgggtttcggcaagaccgaagtggcaatgcgggcggcgttcgtggcggcg
aatgcgggcaagcaggtggcgatgattgcgccgaccaccttgctggcgcagcagcatttg
aacaatttccgtgaccgttttgccgactggccgttcaatatcgaatcgctgtcgcgcttc
aagactggcaaggaaaccagcaaggcactggaggcactcgcatccggcaagatcgacatc
gtaatcggtacgcacaaactgttgcaggacgatgtgcatttcaagcaactggggctggtg
atcatcgacgaggaacaccgcttcggggtgcgcgacaaggagcagatgaaaaagctgcgt
gccaatgtcgatatgttgaccatgaccgccacgccgattccgcgcacgctgaatatgtcg
ctgtcgggcttgcgcgatttgtcgatcattgccaccccgccgacgcaacgccacgccatc
aaaacctttgtgtgcgagtggaacaagaccatcattcaggaagcctgtgcgcgggaattg
tcacgcggcgggcaggtgtacgtgctgcacaacgaggtcaaaaccatcgacaaggtggag
caggaattgagcgcgatgttgcccggtgtgacggtgcgccatgcccacgggcagatgcgg
gcgaatgagctggaaaacatcatgagcgatttttaccaccagcgtttccagattctgatt
gcgactaccatcattgaaagcggcatcgacgtgccgaccgccaacacgattttgatcaac
cgtgccgacaagctggggctggcgcagttgcaccagttgcgcgggcgggtcggacgttcg
caccaccgcgcttacgcttatctgattgcgccgccgaaatccgctctcacgccggatgcg
gtcaagcggctggaagcgattgaatcgctggaagaactgggggtcggtttcacgctggcg
acgcacgatctggagattcgcggcgcgggcgaattgctcggcgaaggccaaagcgggcag
attcaggagatcggtttcaacctctacaacgacttgctggaacgggcggtgaaggcgttg
aaatcgggcaaagtgccggaactgagcgcgaccagccgccgtaccacggtggaattgggt
gcgcctgcgctgatcccggacgattatttgccggatgtccatgcgcggctgatcctctac
aaacgcattgccagcgcggaatcgcaggcggcactggacgaattgcgggtggaaatgatc
gaccgcttcgggctactgccagagccgaccaagacgctgttcagcgtcacgcgggtcaag
ctgctggcgcaggaactgggcatccgcaagctggatatgcacgtcaagggtgggcggatt
atcttcgacgacaaaccgaatattgacccgatgaaggtgattacgctgatccagaaacgc
ccgtgggtgtttaagctggatgggcaggataagttaaggtttgaggtggaattggcgacg
gtggaggagcgggaggagtgggtggttaagttgatgggggagattggggggtaa
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integrated database retrieval system
