Thiothrix unzii: J9260_15040
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Entry
J9260_15040 CDS
T07174
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
tun
Thiothrix unzii
Brite
KEGG Orthology (KO) [BR:
tun00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
tun03016
]
J9260_15040
Enzymes [BR:
tun01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
J9260_15040
Transfer RNA biogenesis [BR:
tun03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
J9260_15040
Prokaryotic type
tRNA splicing ligases
J9260_15040
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
QTR53004
UniProt:
A0A975F8N8
LinkDB
All DBs
Position
3008535..3009767
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AA seq
410 aa
AA seq
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MSTTATPYEVLHEAGHAPVKAWTKGVPFDDNSKKQLLNIAQMPFIHQWVAAMPDVHLGKG
ATIGSVIPTVGAIIPAAVGVDLGCGMMAAKTTLTAADLPDSLEAMRSKIEKVVPHGRVAT
RGKRDTGSWGEPPDDVLEKWLALSAGFQRLCEKHPFLKNTNNLKHLGTLGTGNHFIEVCL
DETQTVWVMLHSGSRGVGNAIGTHFIEQAKKDMERYFIHLPDKDLAYIPEGSPHFRNYVE
AVAWAQDFAQANRELMMARTLQAIREVLPIPFTADVEAVNCHHNYISREHHYGKDVWVTR
KGAVSAQQGQLGIIPGSMGAKSFIVRGLGNAESFCSCSHGAGRVMSRTEAKRRVSLEEHK
RAVAGVECRVDEAVIDETPSAYKPIDKVMAAQSDLVEVLHTLKQVVCVKG
NT seq
1233 nt
NT seq
+upstream
nt +downstream
nt
atgagcactaccgccactccctacgaagtcctccacgaagcaggccacgcgcccgttaaa
gcgtggacaaaaggcgtgcctttcgacgacaactctaaaaagcaattgctgaacattgcg
cagatgccgtttattcaccagtgggtggcggcgatgccggatgtgcatttggggaaaggt
gcaacgattggcagcgtgattccgaccgtgggggcgattattccggcagcggtgggcgtg
gatttgggttgcgggatgatggcggcgaaaaccaccttgaccgcagccgatttgcccgat
tccttggaggcgatgcgtagcaagatcgaaaaagttgttccgcatgggcgcgtggcgact
cgcggtaaacgcgatactggaagctggggtgagccgccggacgatgtgctggaaaaatgg
ttggcgttgagtgcgggtttccagcgtttgtgcgagaagcatccgttcctgaaaaacacc
aataacttgaagcatttggggacgctgggtacgggcaaccatttcatcgaggtgtgtttg
gatgaaacgcaaaccgtgtgggtgatgttgcacagcgggtcacgcggggtggggaatgcc
atcggtacacactttatcgagcaggcgaaaaaggacatggaacgctatttcattcacctg
ccggataaggatttggcgtacatccccgaaggtagcccgcatttccgtaactacgtggag
gcggtagcgtgggcacaggatttcgcgcaagccaaccgcgagctgatgatggcgcgtact
ttgcaagcgatccgcgaggtgttgccgatcccgttcacggcggacgtagaggcggtgaat
tgccaccacaactacatcagccgcgaacaccattacggcaaggatgtgtgggtgacgcgc
aaaggcgcggtgagtgcgcaacaaggtcagcttgggattattccgggcagcatgggggcg
aaatcgttcatcgtgcgcgggctgggtaatgccgaaagcttttgcagttgcagccacggc
gcggggcgcgtgatgtcgcgtactgaggcgaaacgccgcgtgtcgttggaggagcataaa
cgcgctgttgcgggggtggaatgccgcgtggatgaggcagtgattgacgaaacgccgtcg
gcttacaagccgattgataaggtgatggcggcgcaaagcgatttggtggaagtgttgcat
acgctgaagcaggtggtttgtgtgaaggggtga
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