Tupaia chinensis (Chinese tree shrew): 102471049
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Entry
102471049 CDS
T02978
Symbol
PRPF40A
Name
(RefSeq) pre-mRNA processing factor 40 homolog A
KO
K12821
pre-mRNA-processing factor 40
Organism
tup
Tupaia chinensis (Chinese tree shrew)
Pathway
tup03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tup00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
102471049 (PRPF40A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tup03041
]
102471049 (PRPF40A)
Spliceosome [BR:
tup03041
]
Complex A
U1 snRNP components
U1 related factors
102471049 (PRPF40A)
Complex B
102471049 (PRPF40A)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
FF
WW
WW_TCERG1
FF_RHG35_4th
WW_2
Motif
Other DBs
NCBI-GeneID:
102471049
NCBI-ProteinID:
XP_006157680
LinkDB
All DBs
Position
Un
AA seq
989 aa
AA seq
DB search
MQATPSESEAGGESPQSCVSAAHSDWTAGKPVSLLAPLVPPHSAGQPLTFGPSGRQPLRS
LLVGMCSGSGRRRSSLSPTMRPGTGAERGGLMMGHPGMHYAPMGMHPMGQRANMPPVPHG
MMPQMMPPMGGPPMGQMPGMMSSVMPGMMMSHMSQASMQPALPPGVNSMDVAAGTASGAK
SMWTEHKSPDGRTYYYNTETKQSTWEKPDDLKTPAEQLLSKCPWKEYKSDSGKPYYYNSQ
TKESRWAKPKELEDLEGYQNTIVAGGLITKSNLHAMIKAEESSKQEECTTTSAAPVPTTE
IPTTMSTMAAAEAAAAGGAGSGCAXANANASTSTSNTVGGTVPVVPEPEVTSIVATVVDN
ENTVTISTEEQAQLTSTPAIQDQSVEVSSNTGEETSKQETVADFTPKKEEEESQPAKKTY
TWNTKEEAKQAFKELLKEKRVPSNASWEQAMKMIINDPRYSALAKLSEKKQAFNAYKVQT
EKEEKEEARSKYKEAKESFQRFLENHEKMTSTTRYKKAEQMFGEMEVWNAISERDRLEIY
EDVLFFLSKKEKEQAKQLRKRNWEALKNILDNMANVTYSTTWSEAQQYLMDNPTFAEDEE
LQNMDKEDALICFEEHIRALEKEEEEEKQKSLLRERRRQRKNRESFQIFLDELHEHGQLH
SMSSWMELYPTISSDIRFTNMLGQPGSTALDLFKFYVEDLKARYHDEKKIIKDILKDKGF
VVEVNTTFEDFVAIISSTKRSTTLDAGNIKLAFNSLLEKAEAREREREKEEARKMKRKES
AFKSMLKQATPPIELDAVWEDIRERFVKEPAFEDITLESERKRIFKDFMHVLEHECQHHH
SKNKKHSKKSKKHHRKRSRSRSGSDSDDDDSHSKKKRQRSESRSASEHSSSAESERSYKK
SKKHKKKSKKRRHKSDSPESDAEREKDKKEKDRESEKDRTRQRSESKHKSPKKKTGKDSG
NWDTSGSELSEGELEKRRRTLLEQLDDDQ
NT seq
2970 nt
NT seq
+upstream
nt +downstream
nt
atgcaggcgacgccaagtgagtctgaggctgggggcgaatcgccgcagagttgcgtttcg
gcggcgcactctgattggacagcggggaagcctgtcagccttctggccccgctggtcccg
ccccacagcgcaggacagcctttaacctttggccccagcgggcgccagccactcagatcg
ctccttgttggtatgtgtagcggcagtggccgccggcggagcagtctgagcccgacgatg
aggccggggactggagccgagcgcggaggcctcatgatggggcaccctggcatgcattat
gctccaatgggaatgcaccctatgggtcagagagcgaatatgcctccagtacctcatggg
atgatgccacaaatgatgccccctatgggagggccaccaatgggacaaatgcctggaatg
atgtcttcagtaatgcctggaatgatgatgtctcatatgtctcaggcttccatgcagcct
gccttaccgccaggagtaaatagtatggatgtagcagcaggtacagcatctggcgcaaaa
tcaatgtggactgagcataaatcacctgatggaagaacatactactataatactgaaaca
aaacagtctacctgggagaaaccagatgatcttaaaacacctgctgagcaattgctttct
aaatgcccctggaaagagtacaagtctgattctggaaagccttactattacaattctcaa
actaaagaatctcgctgggccaaacctaaagaacttgaagatctagaaggataccagaat
accattgttgctggaggtcttattacaaaatcaaacctgcatgcaatgatcaaagctgaa
gaaagcagtaagcaagaagagtgcaccacaacatcagcagccccagttcctacaacagag
attccgaccacaatgagcaccatggctgctgcagaagcagcagctgctggtggtgcaggc
agcgggtgcgcctaagccaatgccaatgcttccacttctacttctaatacagttggtgga
actgttccagttgttccagagcctgaagttacttccattgttgccaccgttgtagataat
gaaaatacagtaactatttcaactgaggaacaagcacaacttactagtactcctgctatt
caggatcaaagtgtggaagtgtccagtaatactggagaagagacatctaagcaggaaact
gtagctgattttactcccaaaaaagaagaggaagagagtcaaccagcaaaaaaaacatac
acttggaatacaaaggaggaggcaaagcaagcttttaaagaattgttgaaagaaaagcgg
gtgccatccaatgcctcatgggaacaggctatgaaaatgatcattaatgatccacgatac
agtgctttagcaaagttgagtgaaaaaaaacaagcctttaatgcctataaagtccagaca
gagaaagaagaaaaagaagaagcaagatcaaaatacaaagaagctaaggaatcctttcaa
cgttttcttgaaaatcatgagaaaatgacctctacaaccagatacaaaaaagcagaacaa
atgtttggagagatggaagtctggaatgcaatatcagaacgtgatcgtcttgaaatctat
gaagatgttttattctttctttcaaaaaaagaaaaggaacaagcaaaacagttgcgaaaa
agaaattgggaagccttaaaaaacatacttgacaatatggctaatgtaacatactctact
acttggtctgaagcccagcagtatctcatggataatccaacctttgcagaagatgaggag
ttacagaacatggacaaagaagatgcattaatttgctttgaagaacacattcgggcttta
gaaaaggaagaagaagaagaaaaacaaaagagtttgttgagagaaaggagacgacagcgt
aaaaacagagaatcttttcagatatttttagatgaattacatgaacatggacaactacat
tctatgtcatcttggatggaattgtatccaactattagttctgacattagatttactaat
atgcttggtcagcctggatcaactgcacttgatcttttcaagttttatgttgaagatctt
aaagcacgttatcatgatgagaaaaagataataaaagacattctaaaggataaaggattt
gtagttgaagtaaatactacttttgaagattttgtggcaataataagctcaacaaaaaga
tcaactacattagatgctggaaatatcaagttggctttcaatagtttactagaaaaggca
gaagcccgtgaacgtgaaagagaaaaagaagaagctcggaaaatgaaacgaaaagagtct
gcatttaagagtatgttgaaacaagctactcctccaatagaattggatgcggtctgggaa
gatatccgggagagatttgtaaaagagccagcatttgaggatattactctagagtctgaa
cgaaaacgaatatttaaagactttatgcatgtacttgagcatgaatgtcaacatcatcat
tcaaaaaacaagaaacattctaagaaatctaaaaaacatcataggaaacgttcccgctct
agatcggggtcagattcagatgatgatgacagccactcaaagaaaaaacgacaacgatca
gagtctcgttctgcttcagagcattcttctagtgctgagtctgagagaagttataaaaag
tcaaaaaagcataagaagaaaagcaagaagaggagacataaatccgattctccagaatca
gatgctgagcgagagaaggataaaaaagaaaaagatcgggaaagtgaaaaagacagaaca
agacaaagatcagaatcaaaacacaaatcacctaagaaaaagactggaaaggattccggc
aattgggacacttctggcagtgaactgagcgaaggggaattagaaaaacgcagaagaact
cttttggagcaactggacgatgatcaataa
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