Tupaia chinensis (Chinese tree shrew): 102471446
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Entry
102471446 CDS
T02978
Symbol
LIG3
Name
(RefSeq) DNA ligase 3
KO
K10776
DNA ligase 3 [EC:
6.5.1.1
]
Organism
tup
Tupaia chinensis (Chinese tree shrew)
Pathway
tup03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
tup00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
102471446 (LIG3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tup03400
]
102471446 (LIG3)
Enzymes [BR:
tup01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
102471446 (LIG3)
DNA repair and recombination proteins [BR:
tup03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Short Patch-BER factors
102471446 (LIG3)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
LIG3_BRCT
zf-PARP
DNA_ligase_A_C
BRCT_2
RNA_ligase
Synaptonemal_3
mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID:
102471446
NCBI-ProteinID:
XP_006154451
LinkDB
All DBs
Position
Un
AA seq
1012 aa
AA seq
DB search
MTVAIKIFFPQALRVLSRKNLCLFQEHHWPDVRQFSLWSLTDLLHGHCFQRRKPVLSFQG
SHLRPLATSLVFLPGSHVGLCSRSGEMAEQRFCVDYAKRGTAGCKKCKEKIVKGVCRIGK
VVPNPFSESGGDMKEWYHIKCMFEKLERARATTKRIEDLTELEGWEELEDNEKEQINQHI
ADLSSKATGTPKKKAVVQAKLTTAGKVTSPVKGASFVTNTNPRKFSGFSAKPNNSGEAPS
SPSPKASLSSSKCDPKHKDCLLREFRKLCAMVADNPSYNTKTQIIQDFLQKGTAGDGFHG
DVYLTVKLLLPGVIKSVYNLNDKQIVKLFSRIFNCNPDDMARDLEQGDVSETIRVFFEQS
KSFPPAAKSLLTIQEVDEFLLRLSKLTKEDEQQQALHDIASRCTANDLKCIIRLIKHDLK
MNSGAKHVLDALDPNAYEAFKASRNLQDVVERVLRNEQEVEKQPGRRRTLSVQASLMTPV
QPMLAEACKSIEYAMKKCPNGMFSEIKYDGERVQVHKNGDHFSYFSRSLKPVLPHKVAHF
KDYIPQAFPGGHSMILDSEVLLIDNKTGKPLPFGTLGVHKKAAFQDANVCLFVFDCIYFN
DVSLMDRPLCERRKFLHDNMVEIPNRIMFSEMKQVTKASDLADMINRVIREGLEGLVLKD
VKGTYEPGKRHWLKVKKDYLNEGAMADTADLVVLGAFYGQGSKGGMMSIFLMGCYDPSSQ
KWCTVTKCAGGHDDATLARLQKELDMVKISKDPSKIPGWLKINKIYYPDFIVPDPKKAAV
WEITGAEFSKSEAHTADGISIRFPRCTRIRDDKDWKSATNLPQLKELYQLSKEKADFTVM
AGEEGSSSTGGSSGENEGTSGSAVSHKARRAAPNKPSANAKKAEGKLSNPNSKGSNMLTA
KSSPVKVGQKMAVKSSLVKVGEKRKAADETPCQAKVLLDIFTGVRLYLPPSIPDFSRLRR
YFVAFDGDLVQEFDMASATHVLGSREKNPEAQQVSPEWIWACIRKRRLVAPC
NT seq
3039 nt
NT seq
+upstream
nt +downstream
nt
atgactgtggctatcaagatcttcttcccacaagccctccgtgtactcagcagaaaaaac
ctgtgcctcttccaagaacatcattggcctgatgtaagacagttcagcctgtggtcatta
acagatctgcttcatgggcactgcttccagaggagaaagcctgttctatcatttcaggga
agccatctgagaccactcgccacctcccttgttttcttaccagggtcgcatgtgggactc
tgcagtcgctccggtgagatggctgaacaacgattctgtgtggactatgccaaacgaggc
acagctggctgcaaaaaatgcaaggaaaagattgtgaagggcgtatgtcgaattggcaaa
gtagtgcccaatcccttctcagagtctgggggtgatatgaaagagtggtaccacattaaa
tgcatgtttgagaaactggagcgggcccgggccaccacaaagagaattgaggacctcaca
gaactggaaggctgggaagagctggaagataatgagaaggaacaaataaaccaacacatt
gcagatctatcttctaaggcaacgggcactccaaagaagaaagctgtcgtacaggcaaag
ttgacaaccgctggcaaggtgacatcgccagtgaaaggtgcctcatttgtcaccaatacc
aatcctcggaaattttctggcttttcagccaagcccaacaactctggggaagctccctca
agccctagtcctaaggcaagtctgtcttcaagcaaatgtgaccccaagcacaaggactgt
ctgctacgagagtttcgaaagttgtgtgctatggtggctgacaatcctagctacaacacg
aagacccagatcatccaggacttcctacagaagggcacagcaggagatggtttccacggt
gatgtctacctaacagtgaagctgctgctgccaggtgtcattaagagtgtttacaacttg
aatgacaagcagattgtgaagcttttcagccgcatttttaactgcaacccagatgatatg
gcacgggacctggagcagggtgacgtatcagagacaatcagagtcttctttgagcagagc
aagtctttccccccagctgccaagagcctccttaccatccaggaagtggatgaattcctc
ctgcggctctcgaagctcacaaaggaggatgagcagcagcaggccctgcatgacattgcc
tccaggtgtacagccaatgaccttaagtgcatcatcaggttgatcaaacatgatctgaaa
atgaactcaggtgcaaaacatgttttagatgctcttgaccccaatgcctacgaagccttc
aaagcttcacgcaacttgcaagatgtggtggagcgggttcttcgcaacgagcaggaggtg
gaaaagcagccaggccggagacggactctgagtgttcaggcctcgctgatgacgcctgtg
cagcccatgctggctgaagcctgtaagtccatcgagtacgcgatgaagaagtgtcctaat
ggcatgttctctgagatcaagtacgatggcgagcgagtccaggtgcataagaacggagac
cacttcagctacttcagccgcagtctcaagcccgtcctgcctcacaaggtggcccacttt
aaggactacatcccccaggcttttcctgggggccacagtatgatcttggactcagaggtg
ctcttgattgacaacaagacaggcaaaccgctgccctttgggactctgggagtgcacaag
aaagctgccttccaggatgctaatgtctgcctgtttgtttttgattgtatctactttaat
gacgtcagcttgatggacagacccctgtgtgagcgacggaagtttcttcatgacaacatg
gttgaaattcccaacaggatcatgttttcagaaatgaagcaagtcacgaaagcttcggac
ctggctgacatgataaaccgggtgatccgggaggggctggaagggctggtgctgaaggac
gtgaagggcacctatgagcctgggaagcggcactggctaaaagtgaagaaagactatttg
aacgagggggccatggctgacacagctgacctggtggtccttggggccttctatggacaa
gggagcaaaggtggcatgatgtccatcttcctcatgggttgctatgaccctagcagccag
aagtggtgcacggtcaccaagtgtgcaggaggccatgatgacgcaacgctcgctcgcctg
cagaaggaactggacatggtgaagatcagcaaggaccccagcaaaatacctggctggctg
aagatcaacaagatctactatcctgacttcattgtcccagatccaaagaaagctgccgtg
tgggagatcacaggggcggaattctccaaatctgaggctcacacagctgatgggatctcc
atccgattccctcgctgcactcgcatccgtgacgataaggactggaaatctgccactaac
ctcccccagctcaaggaactataccagctgtccaaggagaaggcagacttcacagtaatg
gctggagaagaggggagctcctctacaggcggcagcagtggagagaatgagggtacttca
ggttctgctgtgtcccacaaggcccgcagagccgcccccaacaagccctctgccaatgcc
aagaaggctgaagggaagctgagcaaccccaatagcaaaggcagtaacatgctgacggca
aagtcttcccctgtgaaagtgggacagaagatggccgtgaagtcttctctggtaaaagta
ggagagaagcggaaggctgctgatgagactccatgccaagccaaggtgctgctagacatc
tttactggggtccggctctacttgccgccctccataccagacttcagccgcctcagacgc
tactttgtggcattcgacggggacctggtgcaagaatttgatatggcctcggccacacat
gtgctgggtagcagggaaaagaaccctgaggcccagcaagtttccccggagtggatatgg
gcatgtatccggaaacggagattggttgctccctgctag
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