Tupaia chinensis (Chinese tree shrew): 102478092
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Entry
102478092 CDS
T02978
Symbol
PCF11
Name
(RefSeq) PCF11 cleavage and polyadenylation factor subunit
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
tup
Tupaia chinensis (Chinese tree shrew)
Pathway
tup03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tup00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
102478092 (PCF11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tup03021
]
102478092 (PCF11)
03019 Messenger RNA biogenesis [BR:
tup03019
]
102478092 (PCF11)
Transcription machinery [BR:
tup03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
102478092 (PCF11)
Messenger RNA biogenesis [BR:
tup03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
102478092 (PCF11)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PCF11_RFEG_rpt
PCF11_charged
Pcf11_helical
CID
Pfc11_Clp1_ID
Pcf11_C
zf_PCFS4
SHOCT
Motif
Other DBs
NCBI-GeneID:
102478092
NCBI-ProteinID:
XP_006145037
LinkDB
All DBs
Position
Un
AA seq
1559 aa
AA seq
DB search
MSEQTPAEAGAAGAREDACRDYQSSLEDLTFNSKPHINMLTILAEENLPFAKEIVSLIEA
QTAKAPSSEKLPVMYLMDSIVKNVGREYLTAFTKNLVATFICVFEKVDENTRKSLFKLRS
TWDEIFPLKKLYALDVRVNSLDPAWPIKPLPPNVNTSSIHVNPKFLNKSPEEPSTPGTVV
SSPSISTPPIVPDIQKNLTQEQLIRQQLLAKQKQLLELQQKKLELELEQAKAQLAVSLSV
QXXXXQETSNLGPGSAPSKLHVSQIPPMAVKAPHQVPIQPEKSRPGPPLQIQDLKGTNRD
PRLNRMSQHSSHGKDQSHRKDFLMNTLNQSDIKTSKTVPSEKLNSSKQEKSKSGEKITKK
EFDQVESKSKSKSKSPSPLKNKLSHTKDLKNQESESVRLSDMNKRDPRLKKHLQDKTDGK
DDDVKEKRKTAEKKDKDEHMKSSEHRLIGSRNKVINGIVQKQDTMTEELEKQGAKPGRSS
TRKRSRSRSPKSRSPIIHSPKRRDRRSPKRRQRSMSPTLTPKAGKIRQSGVKQSHMEEFT
PPSREERNAKRSTKQDVRDPRRMKKTEEERPQEAASQHSTKSGSEPKENVENWQSSKSAK
RWKSGWEENKSLQQGDDHSKSPHLRHRESWSSTKGILSPRAPKQQHRLSVDANLQIPKEL
TLASKRELLQKTSERLASGEITQDEFLVVVHQIRQLFQYQEGVREEQRSPFNDRFPLKRP
RYEDPDKPFVDSPASRFAGLDTNQRLTALAEDRPLFDGPGRPSVARDGPTKMIFEGPNKL
SPRIDGPPAPGSLRFDGSPGQMGGGGPLRFEGPQGQLGGGCPLRFEGPPGPVGTPLRFEG
PIGQAGGGGFRFEGSPGLRFEGSAGGLRFEGPGGQPVGGLRFEGHRGQPVGGLRFEGPHG
QPVGGLRFDNPRGQPVGGLRFEGGHGPSGAAIRFDGPHGQPGGGIRFDGPLLQQGVGMRF
EGPHGQSVAGLRFEGQHNQLGGNLRFEGPHGQPGVGIRFEGPLVQQGGGMRFEGPVPGGG
LRIEGPLGQGGPRFEGCHALRFDGQPGQPSLLPRFDGLHGQPGPRFERTGQPGPQRFDGP
PGQQVQPRFDGVPQRFEGPQHQQTSRFDIPLGLQGTRFDNHPSQRLESVSFNQTGPYNDP
PGNAFNAPAQGLQFQRHEQIFDSPQGPNFNGPHGPGNQSFSNPLNRASGHYFEEKNLQSS
QFGNFGNLPAPITVGNIQASQQVLTGVAQPVAFGQGQQFLPVHPQNPGAFVQNPSGALPK
AYPDNHLSQVDVNELFSKLLKTGILKLSQPDSTATQVNEVAAQPPPEEEEDQNEDQDVPD
LTNFTIEELKQRYDSVINRLYTGIQCYSCGMRFTTSQTDVYADHLDWHYRQNRTEKDVSR
KVTHRRWYYSLTDWIEFEEIADLEERAKSQFFEKVHEEVVLKTQEAAKEKEFQSVPAGPA
GAVESCEICQEQFEQYWDEEEEEWHLKNAIRVDGKIYHPSCYEDYQNTSSFDCTPSPSKT
PVENPLNIMLNIVKNELQEPCESPKVKEEQIDTPPACTEETIATPTEIKTENDNTVESV
NT seq
4680 nt
NT seq
+upstream
nt +downstream
nt
atgtcagagcagacgccggccgaggccggtgctgcgggggcccgggaggacgcctgtcgg
gattatcagtcgtcgctggaagacctgaccttcaatagcaaaccgcacatcaatatgctg
accattctagccgaggagaacctgcccttcgccaaggagatcgtctctctcatcgaggcc
caaaccgccaaggctccttcctcagagaagcttcctgttatgtaccttatggattctatc
gtgaaaaacgttggaagagagtatctcactgcctttactaaaaatctagttgcaacattt
atttgtgtgtttgaaaaggtggatgaaaatactaggaaaagtttatttaaattacgttcc
acatgggatgaaatattccccttgaagaaactttatgccctggatgtcagagtcaattca
ttagatcccgcttggcctatcaagcctctaccccccaatgtgaatacgtctagcatccat
gtgaatcctaaatttttaaataaatcgcctgaggagccttctacacctggcacagtggtc
agttcccctagcatctctactcctcccattgttcctgatatacaaaagaatcttacccaa
gaacaacttataaggcagcagttactggcaaagcaaaagcagttgttagaacttcagcag
aaaaagctggagcttgagctagagcaagctaaggcacagctggcagtttctcttagtgtt
cagcnnnnnnnnnngcaggagacatccaacttaggtcctggatctgcgccatccaagtta
catgtttcgcagattccccctatggcagttaaagctccccatcaggttcctatacagcct
gagaaaagccgtccaggtccacccttacaaattcaggatttgaaaggaactaaccgggat
cctcgtcttaacagaatgagccaacattcttctcatggaaaggatcaaagtcacaggaaa
gatttcctaatgaatacattgaaccaatctgatattaagacaagtaaaactgtaccctct
gaaaaactaaattcatccaagcaagaaaaaagtaaatcaggtgaaaaaataaccaagaaa
gaatttgaccaagtagagtctaaatctaaatccaaatctaaatcaccatcacctttgaaa
aacaaattatctcacacaaaagatttaaaaaatcaggaatctgaaagtgtgaggttatct
gatatgaacaagagagatccaagattaaaaaaacaccttcaggataagaccgatggcaaa
gatgatgatgtaaaagagaagagaaaaactgcagaaaaaaaggataaggatgaacacatg
aaatcatctgaacatagactgattggaagtagaaataaagtcataaatggcattgtacaa
aaacaggatacaatgacagaagaattagagaaacagggagcaaaaccagggagatcaagt
acgagaaagagatcaagatcgcgatcacccaagtctcgatcaccaattatacattctcca
aaaagaagagataggcgatcccccaaacgaaggcaaaggagtatgtctccgactttgaca
cccaaagctggaaagattcgccaatcaggagttaagcagtcacatatggaagaatttaca
ccaccctctagggaagaaagaaatgctaagagaagtactaaacaggatgttcgagatcca
aggcgaatgaaaaaaacggaagaggaacgacctcaagaagctgcaagtcaacattctaca
aagtcaggcagtgaaccaaaggagaatgtggaaaattggcaaagctccaagtctgctaaa
cggtggaaatctggttgggaagaaaataaaagcttacaacagggtgatgaccatagtaaa
tctcctcatctaaggcatagggagagctggtcaagcactaaaggaatcttgtcacctcga
gccccaaagcagcagcatcgtttaagtgtagatgccaaccttcagattcctaaagagtta
actcttgcaagcaaaagagaattacttcaaaagacgagtgaacgtttagcatctggtgaa
attacacaggatgagttccttgttgttgtgcatcaaatacgacagctatttcagtatcaa
gaaggtgtacgagaagaacagagatctccattcaatgatcgttttccacttaagcgacct
agatatgaagatccagataaaccatttgtagacagtccagcttcaagatttgctggcctt
gatacaaatcagcgacttactgctttagctgaagacagaccattatttgatggacctggt
aggccatcggtagcaagagatggcccaaccaagatgatttttgaaggacctaataaatta
agccccagaattgatggacctcctgcaccaggttctcttcgatttgatgggtcaccagga
caaatggggggaggaggccctttgagatttgaaggacctcaaggccagttaggaggtggg
tgtcctttgagatttgaaggtcctccaggacctgtagggacgcctttgcggtttgagggg
ccaattggtcaagcaggaggaggtggttttcgatttgaagggtcccctggcctgaggttc
gagggatctgcaggtggtttgcgatttgaaggaccagggggccagcctgtgggtggtctc
aggtttgaagggcatcgtggtcaacctgtgggtggtctcaggtttgagggaccacatggt
caacctgttggtgggcttagatttgataatccccgaggccagcctgttggtggactgaga
tttgaggggggtcatggcccatcaggggctgcaattagatttgatggacctcatggtcag
ccaggaggggggatcagatttgatggccctttgctacagcaaggagttggaatgaggttt
gagggcccccatggtcagtcagtagctggtctgagatttgaaggacaacataatcaactt
ggtgggaaccttaggtttgagggtccacatggtcagccaggggttgggatcaggtttgaa
ggacctttagtccaacaaggaggtggaatgaggtttgagggtcctgtaccaggaggtggc
ctgagaattgaagggcctctgggtcaaggtggtccgagatttgaaggttgtcatgcttta
agatttgatgggcagccgggtcaaccatcactcttgccaagatttgatggattacatggt
caaccaggacctagatttgaaagaactggtcagccaggcccacagaggtttgatgggcca
cctggacagcaggttcaaccaagatttgatggtgtccctcaaagatttgaaggtccacaa
caccagcaaacatcaaggtttgatattcctcttggtcttcaaggcacacgatttgacaat
catccttcccaaaggcttgaatcagtatcttttaatcagactggtccatataatgatcca
cctggcaatgcttttaatgccccagcccaaggactacagttccaaagacatgaacaaata
tttgattcaccacaaggaccaaattttaatggaccacatggccctggaaaccagagtttc
tcgaatccccttaacagagcttctggacactattttgaagaaaagaatcttcagagttct
caatttggaaactttggtaatttacctgctcccataacagtgggaaatattcaggcatct
caacaggtattgactggtgttgctcagccagtcgcatttggccaaggacaacagttttta
ccagttcatccacagaatcctggagcgttcgttcagaatccttcaggagctcttcctaag
gcatatcctgataatcatctcagtcaggtggatgtaaatgaattgttttcaaaactgctg
aaaacaggaattctcaaattgtcccaaccggattcaactgcaacacaagtaaatgaagtt
gctgctcagcctccccctgaagaggaagaagatcaaaatgaagatcaagatgttccagat
cttactaattttacaattgaagaattaaaacaacgttacgacagtgttataaatcgactc
tacactggcattcagtgttactcttgtggaatgaggtttacaacatcacagacggatgta
tatgcagatcacttggactggcattatcgacaaaatagaactgaaaaagatgttagcaga
aaagtcacccacagacgttggtactatagtttaaccgattggattgaatttgaggaaata
gctgatttggaagaacgtgcaaagagccagttttttgaaaaggtacatgaagaagtcgtg
ctcaaaactcaagaagctgctaaagaaaaggagtttcaaagtgttcctgctggaccagct
ggagcagttgagagttgtgaaatctgtcaagaacaatttgaacaatactgggatgaagaa
gaggaggaatggcatttaaaaaatgctattagagtggatggaaagatttatcatccatca
tgttatgaggattatcaaaatacatcttcatttgattgtacaccatctcccagcaagaca
ccagttgaaaaccccttgaacattatgttaaacattgtcaaaaatgaactgcaggaaccc
tgtgaaagtcccaaagttaaggaagaacaaattgatactccaccagcttgtactgaggaa
accatagcaacacccactgaaattaaaacagaaaatgataatacagttgagtcagtttaa
DBGET
integrated database retrieval system
