Tupaia chinensis (Chinese tree shrew): 102479923 Help Entry 102479923         CDS       T02978                                  Symbol COL4A1 Name (RefSeq) collagen type IV alpha 1 chain   KO K06237   collagen type IV alpha Organism tup  Tupaia chinensis (Chinese tree shrew) Pathway tup04151   PI3K-Akt signaling pathway tup04382   Cornified envelope formation tup04510   Focal adhesion tup04512   ECM-receptor interaction tup04820   Cytoskeleton in muscle cells tup04926   Relaxin signaling pathway tup04933   AGE-RAGE signaling pathway in diabetic complications tup04974   Protein digestion and absorption tup05146   Amoebiasis tup05165   Human papillomavirus infection tup05200   Pathways in cancer tup05222   Small cell lung cancer Brite KEGG Orthology (KO) [BR:tup00001]  09130 Environmental Information Processing   09132 Signal transduction    04151 PI3K-Akt signaling pathway     102479923 (COL4A1)   09133 Signaling molecules and interaction    04512 ECM-receptor interaction     102479923 (COL4A1)  09140 Cellular Processes   09144 Cellular community - eukaryotes    04510 Focal adhesion     102479923 (COL4A1)   09142 Cell motility    04820 Cytoskeleton in muscle cells     102479923 (COL4A1)  09150 Organismal Systems   09152 Endocrine system    04926 Relaxin signaling pathway     102479923 (COL4A1)   09154 Digestive system    04974 Protein digestion and absorption     102479923 (COL4A1)   09158 Development and regeneration    04382 Cornified envelope formation     102479923 (COL4A1)  09160 Human Diseases   09161 Cancer: overview    05200 Pathways in cancer     102479923 (COL4A1)   09162 Cancer: specific types    05222 Small cell lung cancer     102479923 (COL4A1)   09172 Infectious disease: viral    05165 Human papillomavirus infection     102479923 (COL4A1)   09174 Infectious disease: parasitic    05146 Amoebiasis     102479923 (COL4A1)   09167 Endocrine and metabolic disease    04933 AGE-RAGE signaling pathway in diabetic complications     102479923 (COL4A1)  09180 Brite Hierarchies   09183 Protein families: signaling and cellular processes    04147 Exosome [BR:tup04147]     102479923 (COL4A1)    00536 Glycosaminoglycan binding proteins [BR:tup00536]     102479923 (COL4A1) Exosome [BR:tup04147]  Exosomal proteins   Exosomal proteins of other cancer cells    102479923 (COL4A1) Glycosaminoglycan binding proteins [BR:tup00536]  Heparan sulfate / Heparin   Extracellular matrix molecules    102479923 (COL4A1) BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  Collagen C4 Motif Other DBs NCBI-GeneID:  102479923 NCBI-ProteinID:  XP_014447532 LinkDB All DBs Position Un AA seq 1651 aa AA seqDB search MAHRLTLRAEGGCAGSGCGKCDCHGVKGQKGERGLPGLQGVIGFPGMQGPEGPQGPPGLK GDAGEPGLPGTKGTRGPPGASGYPGNPGLPGIPGQDGPPGPPGIPGCNGTKGERGPLGPP GLPGFSGNPGPPGLPGMKGDPGEILGHVPGTLLKGERGFPGSPGIQGPPGVPGLQGPVGP PGFSGPPGPPGPPGPPGEKGQMGLSFQGPKGDKGEQGVSGPPGVPGQAQVQEKGDFATKG EKGQKGEPGFQGMPGIGEKGEPGKPGPRGKPGKDGEKGEKGSLGFPGDSGYPGLPGRQGL PGEKGDAGPPGPPGIVIGTGPLGEKGERGYPGTPGLRGDPGPKGFPGIQGPPGPPGIPVP GQAGAPGFPGERGEKGDQGFPGVSLPGPSGRDGLQGPPGPPGPPGQPGHTNGIVECQPGP PGDQGPPGIPGQPGLIGEVGEKGQKGDSCLICDTAGLRGPPGPQGPPGEIGFPGQPGAKG DRGPPGRNGLEGLPGPQGAPGLMGQPGAKGEPGEIYFDLRLKGDKGDPGFPGQPGMPGRA GLPGRDGHPGLPGPKGSPGSVGLKGERGPPGGVGFPGSRGDVGPPGPPGFGPIGPVGDKG QAGFPGSPGSPGLPGPKGEAGAVVPLPGPPGADGLPGSSGFPGPQGDRGFPGAPGRPGQP GEKGAVGQPGIGFPGPPGPKGVDGLPGDVGPPGTPGRPGFNGLPGSPGAPGQKGEPGIGL PGLKGLPGLPGIPGTPGEKGNVGGPGVPGEHGVVGPPGLQGIRGDPGPPGLQGPVGSPGA PGLGPPGAMGPPGGQGPPGSSGPPGIKGEKGFPGFPGLDMPGPKGDKGAQGLPGLTGQSG LPGLPGQQGTPGLPGFPGPKGEMGVMGTPGQPGSPGPVGTPGLPGEKGDHGFPGSSGPRG DPGFKGDKGDVGLPGKPGSMDKVDMGSMKGQKGDQGEKGQVGPTGDKGSRGDPGSPGVPG KDGQPGQPGQQGPKGDPGISGTPGAPGLPGPKGSVGGMGLPGTPGEKGAPGIPGPQGVPG LPGEKGAKGVKGQAGLPGIGIPGRPGDKGDRGMAGFPGSPGEKGEKGSTGTPGIPGSPGL KGSPGSVGYPGNPGLPGEKGDKGLPGLDGIPGAKGESGLPGKPGPMGPAGQKGEPGSDGI PGSAGEKGEPGLPGRGVPGFPGSKGDKGSKGDVGFPGLAGSPGIPXPKGEPGFSGPPGPQ GQPGLPGAPGRPVEGPKGDRGPQGQPGLPGLPGPMGPPGLPGLDGLKGDKGNPGWPGAPG VPGSKGDPGFQGMPGIGGSPGVTGSKGDMGPPGVPGFQGQKGLPGLQGVKGDQGDQGLPG PKGLQGLPGPPGPYDIVKGEPGLPGPEGPPGLKGLQGPPGPKGQQGVTGSAGLPGPPGIP GFDGAPGQKGETGPYGPPGPRGFPGPPGPDGLPGSMGPPGTPSVDHGFLVTRHSQTIDDP QCPPGTKILYHGYSLLYVQGNERAHGQDLGTAGSCLRKFSTMPFLFCNINNVCNFASRND YSYWLSTPEPMPMSMAPITGDNIRPFISRCAVCEAPAMVMAVHSQTIQIPQCPSGWSSLW IGYSFVMHTSAGAEGSGQALASPGSCLEEFRSAPFIECHGRGTCNYYANAYSFWLATIER SEMFKKPTPSTLKAGELRTHVSRCQVCMRRT NT seq 4956 nt NT seq  +upstreamnt  +downstreamnt atggcacataggctcactctgcgggctgagggtggctgtgcaggctctggctgtggaaag tgcgactgccatggcgtgaagggacaaaagggggaaagaggcctccccgggttgcaaggt gtcattgggtttcctggaatgcagggacccgaggggccacagggaccaccaggattaaag ggtgacgctggagaaccaggacttcctggaacgaaagggacacgagggcccccaggagca tctggctaccctgggaacccagggcttcccggtattcctggccaagatggtcccccaggc cccccaggcatccccggatgtaatggaacgaagggagagagagggccgctcgggccgccg ggcttacctggattcagcggcaatcccggaccaccagggttaccaggaatgaagggggat cctggtgaaatacttggccacgtgcctggaacactgttgaaaggtgaaagaggatttcct ggctccccagggatccagggcccaccaggtgtgccagggctgcagggtcctgtcggcccc ccagggttcagcggaccaccgggtcccccaggccctcctggccctccaggcgaaaagggg cagatgggcttgagtttccaaggaccaaaaggggacaagggtgaacagggggtcagtggg cctccaggagtgcccggacaggcacaagtccaagagaaaggagactttgccaccaaagga gagaagggtcagaaaggtgaacccggatttcagggcatgccgggaattggagagaaaggc gaacccggaaagcccgggccccggggaaaacctgggaaagacggtgaaaaaggagaaaag gggagtctaggttttcctggtgactccggatacccagggctcccaggccgccaggggctc ccgggagaaaaaggcgacgcaggtcccccaggcccgcctggaattgttataggcaccggg cctctaggagaaaaaggagagcggggctacccaggaaccccgggcttacgtggcgatccg ggccccaaaggtttcccaggaatacaaggcccaccaggccctccaggaatccccgtacct ggccaggccggcgctcctggcttccctggtgaacgaggagaaaaaggcgaccaaggattt ccaggtgtatctttgccaggaccgagtggaagagatgggctgcagggcccccccggcccc ccagggccccccggacagccaggccacacaaatggaattgtggaatgtcagcctggaccg cctggtgaccaggggccccctggaattccagggcagccgggattgataggcgaagttgga gagaaaggtcaaaaaggggacagttgcctcatctgtgatactgcaggacttcgtggtcct cctgggccccagggacccccaggagaaataggtttcccaggacagccaggggccaagggc gaccgaggtccaccgggcagaaatggtctggaagggctgcctggaccgcaaggtgcacca gggctgatgggccagcctggagccaagggcgaacctggagagatttatttcgacttgcgg ctcaaaggggacaaaggagacccaggttttccaggacagcctgggatgcctgggagagca ggcctgcctgggagagacggccacccaggtcttcctggccccaagggctccccgggctca gtaggactgaaaggagaacgaggcccccctggaggagtcggattccctggcagccgtggt gacgtcggccccccagggcccccagggtttggtcctattggccctgtgggtgacaaagga caagcaggcttccctggaagccctggctccccaggcctgccaggtccgaagggtgaagcg ggggcggtcgtgcccttacctgggccccctggggcagacggccttccgggttcttcagga ttcccaggaccccaaggtgaccgaggctttcccggagctccgggcaggccaggccagcct ggagagaagggtgctgtgggccagccagggatcgggtttccggggcccccaggtcccaaa ggtgtcgacggcctgcctggagatgtggggcctccggggaccccgggtcgcccaggattt aatggcttgcctggcagcccaggtgcaccgggccagaagggtgagcctggaattggttta ccgggactcaaaggactgccaggtctccccggcatccctggcacacctggggagaagggg aacgtcgggggcccaggcgtgcccggagagcatggagttgtcggaccccctgggcttcag ggcatcagaggtgacccagggcctcctggattgcaaggccctgtaggatctccaggagct ccaggactcggcccccccggcgctatgggcccccccggaggtcagggaccgccggggtca tcaggtccccctggcatcaaaggagagaaaggattccccggattccccggactcgacatg ccaggccccaaaggagacaaaggagcccaagggcttcccggcctgacaggacagtcgggg ctccctggccttcctggacagcaggggacgcctggattgcccgggtttccaggtcccaag ggagaaatgggcgtcatggggacccccgggcagccgggatcaccaggaccagtgggcact ccaggattaccgggtgaaaaaggggaccatggcttcccaggatcctcaggacccagggga gatccaggcttcaaaggcgataagggggacgtgggcctccctggcaagcctgggtcaatg gacaaagtggacatgggcagcatgaaggggcagaagggagaccaaggagaaaaaggccaa gtcggacccactggtgataaaggatcccgaggagatcctggaagcccaggagttcctgga aaggatgggcaacccgggcagcctggacagcaaggacctaaaggcgatccaggtataagc ggaaccccaggtgctccaggacttcctggaccgaaaggatcagtcggtggaatgggcctg ccaggaacacctggagaaaaaggtgcacctggcatccctggcccgcagggggtccctggc ttacccggagagaaaggagcaaaaggagtgaaagggcaggcgggtctgcctggcatcggg attcccgggcggcctggtgacaagggagaccgagggatggcaggtttccccggaagcccc ggagagaagggagagaagggcagcactgggaccccagggattccagggtctccaggcctg aaggggtctccagggagtgtcggctacccagggaatcctgggctgcctggagaaaaaggt gacaaaggcctgccgggactggatggcattcctggagccaaaggagagtcaggccttcct gggaaacctggccccatgggcccagctggccagaaaggggagccgggcagtgatggaatc ccagggtcagcaggagagaaaggcgaaccaggtctaccaggaagaggagtcccagggttt cccgggtccaaaggagacaaaggttcaaagggcgatgtgggcttcccaggattggccggg agtccaggcattccnnnncccaaaggagagccaggcttctcaggtcctccggggcctcaa ggacagccaggattgcccggagccccaggccgtcctgtggaggggcccaaaggagaccga gggccacagggacagcctggcctgccaggacttccgggacccatggggcctccagggctc cctggattggatggactgaaaggtgacaaaggaaatccaggctggccaggagcacccggc gttccagggtccaagggtgacccaggattccagggcatgcccggcattggtggctctccg ggagtcacaggttcgaagggtgatatgggacctccgggtgttccaggatttcaaggtcag aaaggtcttcctggcctccagggagttaaaggagatcaaggagaccaaggcctccctgga cctaaaggtctccagggtctccctggccccccaggcccttacgatatcgtcaaaggggag ccagggcttccgggccctgagggtcctcctggtctgaaagggctccaggggcctccaggc cccaaaggacagcaaggtgtgacaggatctgcgggtttacctggacctccaggcattccc gggtttgacggggctcctggccagaaaggagagacggggccatatgggcctccaggtccg agaggatttcctggcccacctggccctgatgggttgccaggatccatggggcccccaggc accccgtctgtcgatcacggcttccttgtgaccaggcacagtcaaacaatagatgaccca cagtgtcctcctgggaccaaaatcctttaccatgggtactccctgctctacgtgcaaggc aacgaacgggcgcacggccaggacttgggcacggcgggcagctgcctgcgcaagttcagc acaatgcccttcctgttctgcaacatcaacaacgtgtgcaacttcgcctcccggaacgac tactcctactggctgtccacgcccgagcccatgcccatgtccatggcgcccatcacgggg gacaacatccggccctttattagcaggtgcgccgtgtgtgaggctcccgccatggtgatg gcagtgcacagccagaccatccagatcccgcagtgtcccagcgggtggtcctcgctgtgg ataggctactccttcgtgatgcacaccagcgctggtgccgaaggttctggccaagccctg gcatctcccgggtcctgcctggaagagttccgaagcgcgccgttcatcgagtgccacggc cgggggacatgcaactactacgccaatgcctacagcttctggctcgccactatagagcgg agcgagatgttcaagaagcccacgccgtcgaccttgaaggcaggggagctccgcacgcac gtcagccgctgccaagtttgcatgagaagaacatga

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