KEGG   Tupaia chinensis (Chinese tree shrew): 102480761
Entry
102480761         CDS       T02978                                 
Symbol
EXOSC1
Name
(RefSeq) exosome component 1
  KO
K07573  exosome complex component CSL4
Organism
tup  Tupaia chinensis (Chinese tree shrew)
Pathway
tup03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:tup00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    102480761 (EXOSC1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:tup03019]
    102480761 (EXOSC1)
Messenger RNA biogenesis [BR:tup03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     102480761 (EXOSC1)
 Prokaryotic type
  Archeal mRNA degradation factors
   Exosome components
    Core exosome
     102480761 (EXOSC1)
SSDB
Motif
Pfam: EXOSC1 ECR1_N RRP4_S1
Other DBs
NCBI-GeneID: 102480761
NCBI-ProteinID: XP_006157463
LinkDB
Position
Un
AA seq 294 aa
MVATKHCAVFTSTDLFNRQLKTQQKPEEAAPLYRWFRFSNWSDLTQPTAPCPAPHGPRQW
TRTRRLSIFNHTRKRKRRGAEPRPRSHPEATWEVELPAGGAPSSRRSRDKRTNRYCIPAS
PGSGTYTRHGYIFSSLAGSLTKSSENGALPVISVTRETESQLLPDVGAIVTCKVSSINSR
FAKVHILYVGSTPLKNSFRGTIRKEDVRATEKDKVEIYKSFRPGDIVLAKVISLGDAQSN
YLLTTAENELGVVVAHSESGVQMVPISWCEMQCPKTHTKELRKVARVQPEFLQT
NT seq 885 nt   +upstreamnt  +downstreamnt
atggtagccacaaagcactgtgctgtcttcacgtccactgacttatttaacaggcagctc
aaaactcagcagaaaccggaggaggctgctccactgtacagatggtttcgattcagtaac
tggagcgatctcacacaacccaccgccccgtgccccgcgccccacggcccccgccagtgg
acccggacccgccgcctgtccatcttcaaccatacgcgcaagcgcaaacgcagaggcgcg
gagccccgcccccggagccatcccgaggcaacctgggaagtggagttacccgcgggaggc
gcgcccagctcccggcgatcacgtgacaagcggaccaatcggtactgcatcccggccagc
ccgggtagcggcacctacacccggcacggctacatcttctcgtcgcttgccggctccctg
acaaagagcagcgagaacggcgcgcttcctgtgatatctgtgacaagagaaacagagtcc
cagttactgccagatgtgggagctattgtaacctgcaaggtctctagcatcaactcacgc
tttgccaaagtacacattctatacgtggggtccacaccacttaagaactctttccgagga
actatccgcaaggaagatgtccgagcaactgaaaaagacaaggttgaaatttataagagt
ttccgccctggtgacattgtcttggccaaagtgatctcccttggggacgcacagtcaaac
tacctgctgaccactgccgagaacgagctgggcgtggtggtggcccacagtgagtcaggc
gtccagatggtgcccatcagttggtgtgagatgcagtgccctaagacccacactaaagaa
ctccggaaagtggcccgagtacagcctgaattcttacagacctaa

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