KEGG   Tupaia chinensis (Chinese tree shrew): 102483652
Entry
102483652         CDS       T02978                                 
Symbol
POLR2A
Name
(RefSeq) RNA polymerase II subunit A
  KO
K03006  DNA-directed RNA polymerase II subunit RPB1 [EC:2.7.7.6]
Organism
tup  Tupaia chinensis (Chinese tree shrew)
Pathway
tup03020  RNA polymerase
tup03420  Nucleotide excision repair
tup05016  Huntington disease
Brite
KEGG Orthology (KO) [BR:tup00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    102483652 (POLR2A)
  09124 Replication and repair
   03420 Nucleotide excision repair
    102483652 (POLR2A)
 09160 Human Diseases
  09164 Neurodegenerative disease
   05016 Huntington disease
    102483652 (POLR2A)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:tup03021]
    102483652 (POLR2A)
   03400 DNA repair and recombination proteins [BR:tup03400]
    102483652 (POLR2A)
Enzymes [BR:tup01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     102483652 (POLR2A)
Transcription machinery [BR:tup03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Core subunits
     102483652 (POLR2A)
DNA repair and recombination proteins [BR:tup03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      102483652 (POLR2A)
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_6 RNA_pol_Rpb1_3 RNA_pol_Rpb1_7 RNA_pol_Rpb1_4 RNA_pol_Rpb1_R
Other DBs
NCBI-GeneID: 102483652
NCBI-ProteinID: XP_006151958
LinkDB
Position
Un
AA seq 1896 aa
MHGGGPPSGDSACPLRTIKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDP
RQGVIERTGRCQTCAGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVD
SNNPKIKDILAKSKGQPKKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDEDLTKEKG
HGGCGRYQPRIRRSGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRISDEECFVLGMEP
RYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQNGAAA
HVIAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVD
FSARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYII
RDNGDRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWS
TFRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQD
TLTAVRKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPGHI
NCIRTHSTHPDDEDSGPYKHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEM
GHDITRLFYSNIQTVINNWLLIEGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIEKA
HNNELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKIN
ISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHA
MGGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGES
VEFQNLATLKPSNKAFEKKFRFDYTNERALRRTLQEDLVKDVLSNAHIQNELEREFERMR
EDREVLRVIFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVVEGVKELSKKL
VIVNGDDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAI
AHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLT
VFLLGQSARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTVVAEDQEWVNVYYEMP
DFDVARISPWLLRVELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIR
IMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKI
IITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALER
ELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETVDVLM
EAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGLGAAGPTG
MFFGSAPSPMGGISPAMTPWNQGATPAYGAWSPSVGSGMTPGAAGFSPSAASDASGFSPG
YSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSPGGYTPQSPSYSPTSP
SYSPTSPSYSPTSPNYSPTSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPN
YTPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSPSYSPTSPSYSPSSPRYTPQ
SPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKYSPTSPKYSPTSPKY
SPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPTSPTYSPTSPKYSPTSPTYSPTS
PKGSTYSPTSPGYSPTSPTYSLTSPAISPDDSDEEN
NT seq 5691 nt   +upstreamnt  +downstreamnt
atgcacgggggtggccccccctccggggacagcgcatgcccgctgcgcaccatcaagaga
gtgcagttcggagtcctcagtccggatgaactgaagcgaatgtccgtgacggaaggcggt
atcaaatacccagagacaactgagggaggccgccccaagcttggggggctgatggatccc
cggcaaggggtgattgagcggacgggtcgctgccagacatgtgcaggaaacatgacagag
tgccctggccacttcggccacatcgagctggccaagcctgtgtttcatgtgggcttcctg
gtgaagaccatgaaagttttacgctgtgtctgcttcttctgctccaaactgcttgtggac
tctaacaacccgaagatcaaggacatcctggccaagtctaagggacagcctaagaagcgg
ctcacacatgtctacgacctctgcaagggcaagaacatctgcgagggcggggaggagatg
gacaacaagttcggtgtcgagcagcccgagggcgacgaggatctgaccaaagaaaagggc
catggcggctgtggacggtaccagccccggatccggcgctccggcttggagctgtatgcg
gagtggaagcatgtgaacgaggactctcaggagaagaagatcctgctgagtccagagcga
gtgcacgagatctttaaacgcatctccgatgaggagtgcttcgtgctgggcatggagccc
cgctacgctcggcccgagtggatgatcgtcacggtgctgccggtgcccccgctctccgtg
cggcctgctgttgtgatgcagggctctgcccgcaaccaggacgatctgactcacaagctg
gccgacatcgtgaagatcaataatcagctacggcgaaatgagcagaatggtgcagcggcc
catgtcattgcagaggacgtgaagctgctccagttccatgtggccactatggtggacaac
gagctgcccggcttgccccgtgctatgcagaagtctggacgtcccctcaagtccctgaag
cagcggctgaagggcaaggaaggccgagtacgagggaacctgatgggcaaacgtgtggac
ttctcagcccgtaccgtcatcacccccgaccccaacttgtccatcgaccaggttggcgtg
ccccgctccatcgctgccaacatgacctttgcagagatcgtcacccccttcaacattgac
aggctgcaagaactggtgcgcaggggaaatagccagtacccaggggccaagtacatcatc
cgggacaacggcgatcgcattgatctgcgtttccaccccaaacccagcgacctgcacctg
cagactggctataaggttgaacggcacatgtgcgacggagacatcgttatctttaaccgg
cagccaacgttgcacaaaatgtccatgatggggcatcgggtccgcatcctcccctggtcc
acttttcgtttgaatcttagcgtgacgactccgtacaatgcagacttcgatggggatgag
atgaacttgcacctgccacagtccctggagacacgggcagagatccaagagttggccatg
gtgcctcgcatgattgtcaccccccagagcaaccgacctgtcatgggtattgtgcaggac
acgctcacggcagtgcgcaaattcaccaagagagacgtcttcctggagcggggtgaagtg
atgaacctcctaatgttcctgtccacctgggacgggaaggtcccacagccagccattctg
aagccccggcccctgtggacaggcaagcagatcttctctctcatcatacccggccacatc
aattgtatccgtacccacagcacccatcccgatgatgaggacagtggcccttacaagcac
atctctcccggggacaccaaggtggtggtggagaatggggagctgatcatgggcatcctg
tgtaagaagtccctgggcacatcggccggctccctggtccacatttcctacctggagatg
ggtcatgacatcactcgcctcttctactccaacattcagactgtcattaacaactggctc
ctcatcgagggtcataccattggcatcggggactccattgcggattctaagacttaccag
gacatccagaacactattaagaaggccaaacaggatgtaattgaggtcatcgagaaggcc
cataacaacgagctggagcccaccccggggaacactctgcgtcagacttttgagaatcag
gtgaaccgtatcctcaatgatgcccgagacaagactggctcctctgcccagaaatccttg
tcagaatacaacaacttcaagtctatggtcgtgtcaggagctaagggttccaagatcaat
atctcccaggtcattgctgtcgtcgggcagcagaacgtggaaggcaagcggatcccgttt
ggattcaagcaccgaactctgcctcacttcatcaaggacgactatggacctgagagccgt
ggctttgtggagaactcctacctggccggcctcacacccaccgagttcttcttccacgcc
atggggggtcgcgaagggctcatcgacacagctgtcaagactgccgagactgggtatatc
cagcggcggctgatcaagtctatggagtcggtgatggtgaagtatgacgcgacggtgcgg
aactccatcaaccaggtggtgcagctgcgctacggcgaggacggcctggcgggcgagagc
gtggagttccagaacctggctactctcaaaccttctaacaaggcttttgagaagaagttc
cgttttgattataccaacgagcgggccctgcggcgcaccctgcaggaggacctggtgaag
gacgtgctgagcaatgcgcacattcagaacgagctggagcgggaattcgagcggatgcga
gaggatcgggaggtgctccgggtcatcttcccaactggcgacagcaaggttgtcctcccc
tgtaacctgctgcgcatgatctggaatgctcagaaaatcttccatatcaacccgcgcctt
ccctctgacttgcatcccatcaaagtggtagagggcgtcaaggaactgagcaagaaactg
gtgattgtgaatggagatgacccgctaagccgacaggcgcaggagaacgccacgctgctc
ttcaacatccacctgcggtccacactgtgctcccgccgcatggccgaggagttccggctc
agtggggaggcctttgactggctgcttggggagatcgagtccaagttcaaccaagccatc
gcccatcctggggagatggtgggagctctggccgcacagtccctcggagaacctgctact
cagatgaccttgaacaccttccactatgctggcgtgtctgccaagaacgtgacactgggt
gtgcccagacttaaggagctcatcaacatttccaagaagccaaagaccccgtccctcact
gtcttcctgttgggccagtctgctcgagatgctgagagagctaaggacattctgtgccgc
ctggaacatacaacgttgcggaaagtgactgccaacacagccatctactatgaccccaac
ccccagagcacagtggtagctgaggaccaggagtgggtgaacgtctactatgagatgcct
gacttcgacgtggcccggatctccccctggctattgagagtagagctggaccggaagcac
atgactgaccggaagctgaccatggagcagattgccgagaagatcaacgctggtttcggc
gatgacttgaattgcatctttaacgatgacaacgcagagaagctggtgctccgtatccgc
atcatgaacagtgatgagaacaagatgcaggaggaggaagaggtggtggacaagatggat
gatgacgttttcctgcgctgcatcgagtccaacatgctgaccgacatgaccctgcagggc
atcgagcagatcagcaaggtgtacatgcacttgccgcagacggacaacaagaagaagatc
atcatcacggaggacggggagttcaaggccctgcaggagtggatcctggagacggacggc
gtgagcttgatgcgtgtgctgagcgagaaggacgtggaccccgtgcgcaccacgtccaat
gacattgtggagatcttcacggtgctgggcatcgaggccgtgcggaaggcgctggagcga
gagctgtaccatgtcatctccttcgacggctcctacgtcaattaccggcacttggctctc
ctgtgcgacaccatgacctgccgcggccacttgatggccatcacccgacacggagtcaac
cgccaggacacggggccactcatgaaatgttcctttgaggaaacggtcgatgtgctcatg
gaagcagcggcacacggggagagtgaccccatgaagggggtctctgagaacatcatgctg
ggccagctcgctccagccggcaccggctgttttgacctcctgctggatgcagagaagtgc
aagtacggcatggagatccccaccaacatccctggcctgggcgctgccggacctaccggc
atgttcttcggctcagcgcccagtcccatggggggaatatctcctgccatgacgccctgg
aaccagggtgcgaccccagcctatggcgcctggtctcccagtgttgggagtggaatgacc
ccaggggcagctggcttctctcccagtgctgcttcagatgccagtggcttcagcccaggc
tactcccctgcctggtcgcccacgccgggctccccgggctcgccaggcccctcgagtccc
tacatcccctcaccaggtggcgccatgtcgcccagctactctccaacatctcctgcctat
gagccccgctctcctgggggctatacaccccagagtccctcgtactcccccacttcaccc
tcctactctcctacctccccctcctattctccaaccagtcccaactacagccccacctcc
cctacctcccccagctactcacccacttcccccagctactcccccacctcccccagctac
tcacccacctcccccagctactcacccaccagcccgaactattctccaacaagtcccaac
tacaccccaacatcacccagctatagccctacgtctcccagctattcacccactagtccc
aactacacgccgaccagccccaactacagcccaacctctccgagctactctccaacttca
cccagctactccccgacctcacccagctactccccttccagcccacgatacacaccacag
tctcccacctacaccccaagctcccccagctacagccccagctctcccagctacagcccc
acctcacccaagtacaccccaaccagtccatcctacagccccagctcaccagagtatacc
ccaacctctcccaagtactcccctaccagccccaagtattcacccacctctcccaagtac
tcgcctaccagccccacctattcacccaccactccgaagtactccccaacgtctcctact
tactcacccacctctccagtctacaccccaacctcccccaagtattcgcctactagccct
acctactcacccacctcccccaagtactcgcccaccagccccacctactcacccacctcc
cccaaaggttcaacctactctcccacttcccctggctactcacccaccagccccacctac
agtctcaccagcccagccatcagcccagacgacagtgatgaggagaactga

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