Tupaia chinensis (Chinese tree shrew): 102487728
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Entry
102487728 CDS
T02978
Symbol
HDAC6
Name
(RefSeq) histone deacetylase 6
KO
K11407
histone deacetylase 6 [EC:
3.5.1.98
]
Organism
tup
Tupaia chinensis (Chinese tree shrew)
Pathway
tup04613
Neutrophil extracellular trap formation
tup05014
Amyotrophic lateral sclerosis
tup05034
Alcoholism
tup05203
Viral carcinogenesis
Brite
KEGG Orthology (KO) [BR:
tup00001
]
09150 Organismal Systems
09151 Immune system
04613 Neutrophil extracellular trap formation
102487728 (HDAC6)
09160 Human Diseases
09161 Cancer: overview
05203 Viral carcinogenesis
102487728 (HDAC6)
09164 Neurodegenerative disease
05014 Amyotrophic lateral sclerosis
102487728 (HDAC6)
09165 Substance dependence
05034 Alcoholism
102487728 (HDAC6)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
tup01009
]
102487728 (HDAC6)
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tup03019
]
102487728 (HDAC6)
04131 Membrane trafficking [BR:
tup04131
]
102487728 (HDAC6)
03036 Chromosome and associated proteins [BR:
tup03036
]
102487728 (HDAC6)
Enzymes [BR:
tup01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
102487728 (HDAC6)
Protein phosphatases and associated proteins [BR:
tup01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
102487728 (HDAC6)
Messenger RNA biogenesis [BR:
tup03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
102487728 (HDAC6)
Membrane trafficking [BR:
tup04131
]
Autophagy
Aggrephagy
Other aggrephagy associated proteins
102487728 (HDAC6)
Chromosome and associated proteins [BR:
tup03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class II HDACs
102487728 (HDAC6)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Hist_deacetyl
zf-UBP
zf-UBP_var
Motif
Other DBs
NCBI-GeneID:
102487728
NCBI-ProteinID:
XP_006171993
LinkDB
All DBs
Position
Un
AA seq
1241 aa
AA seq
DB search
MTSTGQDATTTRQRRNRHSPQLPPHDSSVTSKRSVKKGTGPRTAHSLAELKKKGKMKKLS
QAASEEDLVMGLQGLDLNLEAKALAGTGLVLDEQLNEFHCLWDDSFPESPQRFHAIKEQL
IQEGLLDRCVSFPARFAEKEELMLVHSLEFIDLMETTQYMSEEELRVLADTYDSVYLHPN
SYTCACLASGSVLRLVDAVLGAEIRNGMAIVRPPGHHAQHSLMDGYCMFNHVAIAARYAQ
QKHSTQRVLIVDWDVHHGQGTQFTFDQDPSVLYFSIHRYEQGRFWPHLKASNWSTTGFGQ
GQGYTINVPWNQVGMRDADYIAAFLHVLLPVALEFQPQLVLVAAGFDALQGDPKGEMAAT
PAGFAQLTHLLMGLAGGRLILSLEGGYNLRSLAKGVSASLHTLLGDPCPMLESPGAPCRS
AQISLSCALEALEPFWEILVRSVEPFKDDNMEDSTEDEDGPWEPPVLPMLTWPVPKARTG
LVYDQRMMSHHNLWDNHHPEMPQRISRIMSRLEELGLARRCLPLPARLATNAELLTCHSA
EYVSRLRATERMKSRELHREGANYDSIYICPSTFACAQLATGAVCRLVEAVLRGEVLNGA
AIVRPPGHHAEQDAACGFCFFNSVAVAARHAQALSGRALRILIVDWDVHHGNGTQHMFED
DPSVLYMSLHRYDHGTFFPMGHEGASNQIGRAAGIGFTVNVAWNGPRMGDADYLAAWHRL
VLPIAYEFNPELVLVSAGFDAARGDPLGGCQVSPEGYAHLTHLLMGLANGRVLLILEGGY
NLTSISESMAACIHSLLGDSPPLLALQRPPLSGALASITETIQVHRRYWRSLRVTKAEDK
EELSISKSVTKKASQPANPGLTERMTPPQENILGAGMGKVTAALSAEESTPSQTKSETAV
VVLTVEQPSEAAVEGTIEGQTISEEAVGGATQGPTTSEEAPGGATEGQTTLEEVAGGATQ
DQTTSEEAEGVATQCQTTSEEAAKEATLGQTTSEKTGGKAMLHQTIAEAAEGEGMIDQTT
PEKTSRGATLDQTTSEEAVKGAELIQTPLDSCTEDQTTPTSPMQEAKPQISLSQLTGNNK
TLELDNKAQATTESQAPEEEGLLGEAAGGQAMDDSMLMQAFGNLVDTTQATFYAVMPRSW
CPHLVAVCPTPAAGLNVTQPCQDCGTCRENWVCLSCYQVYCARYVNAHMLRHYEDSGHPL
VLSYVDLSAWCYPCQAYVHHEALLDVKNIAYRDKFGEDMPH
NT seq
3726 nt
NT seq
+upstream
nt +downstream
nt
atgacctccaccggccaggatgccaccacaaccaggcagagaaggaataggcacagtccc
cagttaccccctcatgactccagcgtcacttcgaaacgaagtgttaagaagggcactgga
ccccgcaccgctcacagtctagcggaattaaagaagaaaggcaaaatgaagaagcttagc
caagcagcttctgaagaagacctagtcatggggctgcaagggctggatctgaaccttgag
gccaaggctctagctggcactggcttggtgttggacgagcagctaaatgaattccattgt
ctctgggatgacagctttcctgaaagccctcagcggttccatgccatcaaggagcaactg
atccaggagggcctcctggatcgctgtgtgtcctttccggcccggttcgccgaaaaagag
gagctgatgttggttcacagcctagagttcattgatctgatggaaacaacccagtatatg
agtgaggaggaactccgcgtcctagcagacacctatgactcagtttatctgcatccgaac
tcatatacctgtgcctgcctggcctcaggctccgtcctcaggctggtggatgcagtcttg
ggggctgagatccggaatggcatggccattgtcaggcctcctggacatcatgcccagcac
agtcttatggatgggtattgcatgttcaaccatgtggctatagctgcccgctacgcccag
cagaagcacagcactcagagggtccttatcgtggattgggatgtgcaccatggtcaagga
acacagttcaccttcgaccaggaccccagtgtcctctatttctccatccatcgctatgag
cagggtcggttctggcctcaccttaaagcctctaactggtccaccacaggttttggacaa
ggccagggatataccatcaatgtgccttggaaccaggtggggatgcgggatgctgactac
atcgctgctttcctgcacgtcttgctgccagtcgcccttgagttccagcctcagttggtc
ctggtggctgctggatttgatgccctccaaggagaccccaagggtgagatggccgccact
ccagcagggtttgcccagctcacccacctgctcatgggtctggcaggaggcaggctgatc
ctgtctctggagggtggctacaatctccgctcccttgccaaaggtgtcagtgcctcactc
cacacccttctgggagacccttgtcccatgctggagtcgcctggtgccccctgccggagt
gcccagatctcactctcctgtgctctggaagccctggagcctttctgggagatcctggtg
aggtcagtcgagcccttcaaggatgacaacatggaggacagcacggaggacgaggacggc
ccctgggagccccctgtgctcccgatgctgacctggccagtgcccaaggcccgcacaggg
ctggtctatgaccagcgtatgatgagccatcacaacttatgggacaaccaccaccctgag
atgcctcagcgcatctcccgaatcatgagccgcctagaggagctgggccttgccaggcgc
tgcctccccctgcccgcacgtcttgccactaatgctgagctgctcacctgccacagtgct
gagtacgtgagtcgtctccgggccacagagaggatgaaatcccgggagcttcaccgtgag
ggcgccaactatgactctatctacatctgtcccagcacctttgcctgtgcacaactggcc
actggcgcagtctgccgcttggtggaggctgtactcaggggagaagttttgaatggtgct
gccatcgtgcgccccccaggacaccatgctgagcaggatgcagcctgtggtttctgcttt
ttcaactctgtggctgtggcagctcgccatgcccaggccctcagtgggcgtgctctgcgg
atcctgattgtggactgggacgttcatcatggcaatgggactcagcacatgtttgaggat
gatcccagtgtgctgtatatgtccctgcaccgctatgatcacggtaccttcttccccatg
gggcatgagggtgctagcaaccagattggccgggccgctggcataggctttactgtcaat
gtggcctggaatgggccccgcatgggtgacgctgactacttggctgcctggcatcgtctg
gtgcttcccattgcctatgagtttaatccagaactggtgctggtctcagctggttttgat
gctgcacggggagacccactggggggctgccaagtgtcacctgagggctatgcccacctt
actcacctgctgatgggccttgccaatggccgtgttctccttatcctagagggtggttat
aacctgacatccatctcagagtctatggccgcctgcattcactctctccttggagactca
cctcccctgctggccttgcagcggcccccgctttcaggagccctggcctccatcactgag
accatccaagtccatcgcagatactggcgtagcttgcgggtcacaaaggcagaagacaag
gaggaactctccatttctaagtctgttaccaagaaggcatcccaaccagccaatcctggg
ttgactgagaggatgaccccgccacaagagaacatcctgggagcaggcatggggaaggtc
accgcagcattatctgcagaagagtccactccaagccagactaagtcagaaacagctgtg
gtggtgttgactgtggagcagccctcagaggcagctgtggagggaaccatagagggccag
accatctcagaggaggctgtggggggagccacacagggcccaaccacctcagaggaggca
ccagggggagcaaccgagggccagaccaccttagaggaggtggcagggggagccacacag
gaccagaccacctcagaggaggcagagggggtagccacacagtgccagaccacttcggag
gaggcagcaaaggaagccactctgggccagaccacctctgagaagactggagggaaagcc
atgctgcaccagaccatcgcagaggcagccgaaggggaaggcatgatagaccagaccact
ccagaaaagacttcaaggggagctacacttgaccagaccacctcagaggaggctgtgaag
ggagcagaactgatccaaactcctctagactcatgcacagaagaccagaccacccctacc
tcacctatgcaagaagccaaaccccaaatatctctcagtcagctgactgggaataacaaa
accttggaactagacaacaaagcacaggcaaccacagaatctcaggccccagaagaggag
ggcctcctaggagaggcagctggaggtcaggccatggatgattctatgctgatgcaggca
tttgggaaccttgttgacactacacaggccacattttatgctgtaatgccacggtcctgg
tgtccccatttggtggcagtatgccccacacctgcagcaggcttaaatgtgacccagcct
tgccaggactgtggaacgtgcagggagaattgggtgtgtctgtcctgctatcaggtctac
tgcgctcgttatgtaaatgcccacatgctccgacactatgaagactctggacacccattg
gtcctcagctacgttgacctgtctgcttggtgttacccctgccaggcctatgtacaccat
gaggctctcctagacgtgaagaacatcgcctaccgggacaagtttggggaggatatgcct
cattaa
DBGET
integrated database retrieval system
