KEGG   Tupaia chinensis (Chinese tree shrew): 102489000
Entry
102489000         CDS       T02978                                 
Symbol
COL4A6
Name
(RefSeq) collagen type IV alpha 6 chain
  KO
K06237  collagen type IV alpha
Organism
tup  Tupaia chinensis (Chinese tree shrew)
Pathway
tup04151  PI3K-Akt signaling pathway
tup04382  Cornified envelope formation
tup04510  Focal adhesion
tup04512  ECM-receptor interaction
tup04820  Cytoskeleton in muscle cells
tup04926  Relaxin signaling pathway
tup04933  AGE-RAGE signaling pathway in diabetic complications
tup04974  Protein digestion and absorption
tup05146  Amoebiasis
tup05165  Human papillomavirus infection
tup05200  Pathways in cancer
tup05222  Small cell lung cancer
Brite
KEGG Orthology (KO) [BR:tup00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   04151 PI3K-Akt signaling pathway
    102489000 (COL4A6)
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    102489000 (COL4A6)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    102489000 (COL4A6)
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    102489000 (COL4A6)
 09150 Organismal Systems
  09152 Endocrine system
   04926 Relaxin signaling pathway
    102489000 (COL4A6)
  09154 Digestive system
   04974 Protein digestion and absorption
    102489000 (COL4A6)
  09158 Development and regeneration
   04382 Cornified envelope formation
    102489000 (COL4A6)
 09160 Human Diseases
  09161 Cancer: overview
   05200 Pathways in cancer
    102489000 (COL4A6)
  09162 Cancer: specific types
   05222 Small cell lung cancer
    102489000 (COL4A6)
  09172 Infectious disease: viral
   05165 Human papillomavirus infection
    102489000 (COL4A6)
  09174 Infectious disease: parasitic
   05146 Amoebiasis
    102489000 (COL4A6)
  09167 Endocrine and metabolic disease
   04933 AGE-RAGE signaling pathway in diabetic complications
    102489000 (COL4A6)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:tup04147]
    102489000 (COL4A6)
   00536 Glycosaminoglycan binding proteins [BR:tup00536]
    102489000 (COL4A6)
Exosome [BR:tup04147]
 Exosomal proteins
  Exosomal proteins of other cancer cells
   102489000 (COL4A6)
Glycosaminoglycan binding proteins [BR:tup00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   102489000 (COL4A6)
SSDB
Motif
Pfam: Collagen C4
Other DBs
NCBI-GeneID: 102489000
NCBI-ProteinID: XP_014441179
LinkDB
Position
Un
AA seq 1695 aa
MHPGFWLFLVTLCLTEELAGAGEKKSYGKPCGGQDCSGVCKCFPEKGTRGQPGLIGIQGP
SGPQGFTGPTGLSGLKGERGSPGPLGPYGPKGDKGPIGVPGFLGINGIPGHPGQPGPRGP
PGLDGCNGTQGPIGFPGPDGYPGLLGPPGLPGQKGSKGEPAFAQGSFKGIKGDPGLPGLD
GITGPQGEPGFPGAVGPIGPLGLQGPPGPPGFPGPEGNMGLGFQGEKGVKGDVGPPGPAG
PPPSTGELEFMGLPKGKKGSKGEPGPKGFPGKSDTPIFGTPGEKGEKGVLGLPGPRGPMG
SEGVQGPPGQKGKKGSSGFPGLNGFPGIKGEKGGIGLPGPDVFVDTDGVVISGYPGDPGP
PGLPGLKGDEGIQGPRGPAGIPGLPALPGVPGALGPQGLPGLKGNQGNPGHSTTGATGLP
GRDGLPGLPGLPGLPGLPGPSLTTGTLHSTETGFPGLRGERGLKGDLGLKGVKGDSGFCA
CDGGISSTGPPGKPGLPGPQGLMGLPGLKGTRGDPGSVGAQGPAGTPGLFGSSGLAGTKG
EKGKPALSTGSGAPGERGDPGLQGFPGVKGAPGKDGIPGLPGLPGLSGDSGQGFPGEKGL
PGLPGKKGQYGPPGPPGIGLPGLPGHRGPPGDQGINGLPGKQGFPGLPGDCCCREKVGKG
DLDTEGGITLPCIIPGSYGPSGFPGAAGFPGPKGARGLPGIPGQPGSYGNKGEPGSPGLI
RLPELPGFPGPRGEKGLPGFPGLPGKDGLPGKVGSPGVPGSRGAAGDIFGAENGAPGEQG
LQGLPGDRGFPGDSGLPGPKGLHGKSGLLGPKGERGSPGTPGHIGQPGPPGPDGLDGIKG
KPGLPGTPGFPGSSGHPGKKGPRGEAGSPGSAGKKGLPGLKGLPGSPGLSGFKGSPGXXX
XXXXXXXXAGSIGLPGLPGLKGEKGSIGLIGFPGIPGLPGIPGPSGLKGIPGSPGKVGIP
GQMGIPGKKGDRGDPGPNGIPSLRPPQLNLWFKGDKGSQGSAGSDGFPGTRGDKGESGRP
GPPGLPGVPGFPSTIRGLTGRQGSPGSPGLRGLPGLKGSSGITGFPGSQGLNGPPGRPGA
SGLPGSKGDQGQILEISGHPGPKGQPGEPGLKGVKGKAGLVGDVGFPGNKGEDGKVGISG
DTGLPGSPGLPGIAGVRGDPGLQGSSGQPGTTGPLGPSGLIGLKGFPGLPGLRGLHGLPG
TKGTHGTPGPSITGVPGPAGLPGPKGEKGSPGIEAGAPGKPGSRGQKGDRGFPGLQGPAG
LPGSPGISLPSIIAGQPGDPGRPGLDGERGRPGPRGPPGPPGPSSDQGDPGDPGFPGIPG
PQGLKGDQGIPGFSGLPGELGLKGMRGEPGFMGTPGKVGPPGDPGFPGMKGKAGPRGFSG
PRGTPGQTPIAEAVQVPPGPLGLPGIDGISGLIGDPGVQGLVGLQGSKGLPGALGDPGLP
GLQGPPGFEGAPGQQGPFGRPGMPGQSVRVGYTLVKHSQSEQVPLCPIGMSQLWVGYSLL
FVEGQEKAHNQDLGFAGSCLPRFSTMPFIYCNINEVCHYARRNDKSYWLSTTAPIPMMPV
GQAQIPQYISRCSVCEAPSQAIAVHSQDITIPQCPLGWRSLWIGYSFLMHTAAGAEGGGQ
SLVSPGSCLEDFRATPFIECSGARGTCHYFANKYSFWLTTVEERQQFWEEPVSETLKAGQ
LHTRVSRCQVCMKSL
NT seq 5088 nt   +upstreamnt  +downstreamnt
atgcaccctgggttttggctgttcctggtgacgctgtgcctgaccgaggaactggcagga
gcgggagagaagaaatcctatggaaagccatgtgggggacaagactgcagtggggtctgc
aaatgctttcctgagaaaggaacaagagggcaacctggactaattggaattcaaggtcca
tcaggtcctcaaggtttcactggtcctactggattatcaggcttgaaaggagaaaggggt
tccccaggccctctgggaccatatggaccaaaaggagataagggtcccataggagttcct
ggctttcttggtatcaatgggatcccgggccaccctggacaaccaggccccagaggccca
cctggcctggatggctgtaatggaactcaaggacctattggattcccaggcccagatggg
tatcctgggcttcttggaccacctgggcttcctggtcagaaaggctctaaaggggaacct
gcctttgctcaaggtagtttcaaaggaataaagggggatcctggactgcccggactggat
ggaataactggtccccaaggagaacctggatttcctggagctgtaggacctataggacca
ctgggattacaaggtcctccaggcccccctggttttcctggtcctgaagggaatatgggg
ttaggtttccaaggagagaaaggagtcaagggtgacgttggcccccctggccctgcagga
cctccaccatctactggagaactagaattcatgggacttcccaaaggaaagaaaggatct
aagggtgaaccagggcctaagggttttccaggcaaaagtgacactccgatatttggaact
cctggtgaaaagggagaaaagggagtccttggtttaccaggacctaggggtcctatgggt
tcagaaggagtacaaggccctccaggacaaaagggcaagaagggatcctcaggcttccct
gggcttaatggattcccaggaattaagggtgaaaagggtggaattggcctgccaggccca
gatgtgttcgttgatacagatggtgttgtgatctcaggttatcctggagaccctggtcca
ccaggcctcccaggccttaaaggagatgaaggtatccagggcccacgtggccctgctggc
atccccggcttaccagctttaccaggtgtcccaggtgccctagggcctcaaggacttcca
ggcctgaagggcaaccaaggaaacccaggccattccacaactggggcaactggcctccct
ggcagagatggcttgccaggcctaccaggcctaccaggcctaccaggcctgcctggtcca
tcacttacaactggaaccctacatagcacagagacaggcttccctggtctcagaggagaa
agaggtcttaaaggagatctaggcctcaaaggagtaaaaggggactcgggattttgtgct
tgtgatggtgggatctctagcaccggaccacctggaaaaccaggcctgcctgggccacaa
ggtctcatgggcctcccaggtcttaaaggaaccagaggagatccaggttctgtgggtgca
caaggccctgcagggactccaggcttatttgggtcttcaggtcttgcaggcaccaaagga
gagaaggggaaaccagctctcagtacaggatctggggcaccaggggagcggggtgatcct
ggccttcaggggttccctggtgtgaagggagccccaggcaaggacggaataccaggttta
ccaggtctgccaggtctttcgggtgatagtggacagggtttcccaggtgaaaagggatta
ccaggacttcctggtaaaaaaggccagtatggtcctcctggcccccctggaattgggctg
ccaggacttccaggacaccgtgggcctcctggagatcaaggaataaatggcttgcctgga
aaacaaggcttccctgggcttccaggtgactgctgctgcagggagaaggttggtaaagga
gacttagacacagagggaggaatcaccttaccttgtattattcctggctcatatggtcca
tcaggatttccaggagctgccggatttccaggccctaaaggagcccgtggcctccctggg
attcccgggcagcctggatcatatggaaataaaggggagcctggaagtccaggattgatt
cgtctccctgaattgccaggatttcctggacctcgtggggagaagggcttgcctgggttt
cctgggctccctggaaaagatggcttgcctgggaaggttggcagtccaggcgtcccaggt
tccagaggagccgctggtgacatctttggtgctgaaaatggtgctccaggggagcaaggc
ctgcagggattgccaggggacagaggatttcctggagactctggccttccaggacccaag
ggtttgcatgggaagtctggcttgctaggccccaaaggtgagcggggcagcccaggaaca
ccaggacatataggacagccaggacctccagggcctgatggtctggatggcatcaagggc
aaacctgggctcccaggaacaccaggttttcctggctcttcaggtcatcctggaaagaaa
ggtccaagaggtgaggcaggttcccctggctcagctggtaagaaaggtctacctgggctg
aaaggccttcctggatctcctgggctaagtggctttaaggggagtccaggctnnnnnnnn
nnnnnnnnnnnnnnnnnnnnnnnagcaggaagcatcggattgccaggcctcccaggccta
aagggtgaaaagggatccatcggactgattggctttccagggataccaggtctccctggt
attcctggcccaagtggattaaagggaattcctgggtcacctgggaaagttggaatacct
ggacaaatgggtattcctggtaaaaaaggagacagaggtgatccagggccaaatggaata
cccagtctaagacctccacaactgaacctttggttcaaaggagacaaaggctctcagggc
tcagctggatcagatggatttcctgggaccagaggtgacaaaggagagtcaggccgccct
gggccaccaggcctacctggagttcctggcttcccaagcaccatcaggggactcactggg
aggcaaggctcccctggctcccctggcctacgaggtttacctggcctgaagggatcctct
gggatcacaggtttcccaggttcacaaggtctcaatgggcctcctggacgtccaggagca
tctggccttccaggttcaaaaggagatcaaggacagatacttgaaatttccggccatcca
ggacccaagggacaacctggggaacctggcttgaaaggggttaaaggaaaagctggacta
gttggtgatgttggtttcccaggaaacaaaggtgaagatggaaaagttggtatttctgga
gatactggccttccaggttccccaggacttccagggattgcaggtgtcagaggagaccca
ggacttcaaggttcctctggtcagccagggacaactgggcccctcggaccctcgggccta
atagggcttaaaggctttcctggtcttcccggtttacgtggactgcatgggctcccaggc
accaagggaacccacggaactccaggaccaagtataactggtgttcctggacctgctggc
ctacctgggcccaaaggtgaaaaaggttcaccaggaattgaagctggagctccagggaag
ccagggtcaagaggacaaaaaggagaccgaggttttccaggtctccaaggccctgctggt
ctccctggttccccaggtatctcccttccctccatcatagcaggacaacctggtgatccc
ggacgaccaggcttagatggagaacgaggccgcccaggtccccggggacctcctggtccc
cctggaccatcctcggatcaaggtgaccctggagaccctggcttccccggaattcctggc
cctcaagggctcaagggagaccaggggattccaggtttttctggtctccctggagaacta
ggactgaaaggcatgagaggggagcctggcttcatgggaactccaggcaaggtgggacca
cctggagacccaggatttcctgggatgaaggggaaggcaggaccaagaggcttttctggc
cctcgaggcactcctggacaaacgccaattgcagaagccgtccaggtccctcctggacca
ttgggtctaccaggcattgatggcatctctggcctcataggagaccctggggttcaaggc
cttgtaggcctacaaggctccaagggtttacctggggcacttggtgatcctggtctgcct
ggattgcagggccctccaggatttgaaggagctccagggcagcaaggcccctttgggagg
cctggaatgcctggccagagtgtaagagtgggctacacattggtgaagcacagccagtca
gaacaggtgcctctgtgccccatcgggatgagccaactgtgggtgggttacagtttgctg
ttcgtggaagggcaggagaaagcccacaaccaggatctggggtttgctggttcctgccta
ccccgcttcagcaccatgcccttcatctactgcaacatcaacgaagtgtgccactatgcc
aggcgcaatgacaagtcctactggctctctaccactgcacctatccccatgatgcctgtt
ggccaggcccagattccccagtacatcagccgctgttctgtgtgtgaggcgccttcacaa
gccattgctgtacacagccaggacattaccatcccacagtgccctctgggctggcgcagt
ctctggattgggtactctttcctcatgcacacggccgctggtgcagagggtgggggccag
tccctggtctcccctggctcctgtttggaggactttcgggccactcctttcatcgagtgc
agtggtgctcgaggcacctgccactactttgccaacaaatacagtttctggctgacaaca
gtggaagagagacagcagttttgggaggagcctgtgtctgaaacattgaaagctgggcag
ctccatactcgggtcagccgctgccaggtgtgtatgaaaagcctgtaa

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