Tupaia chinensis (Chinese tree shrew): 102489005
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Entry
102489005 CDS
T02978
Symbol
PABPC1
Name
(RefSeq) poly(A) binding protein cytoplasmic 1
KO
K13126
polyadenylate-binding protein
Organism
tup
Tupaia chinensis (Chinese tree shrew)
Pathway
tup03015
mRNA surveillance pathway
tup03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tup00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
102489005 (PABPC1)
09123 Folding, sorting and degradation
03018 RNA degradation
102489005 (PABPC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tup03019
]
102489005 (PABPC1)
03041 Spliceosome [BR:
tup03041
]
102489005 (PABPC1)
Messenger RNA biogenesis [BR:
tup03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
102489005 (PABPC1)
mRNA cycle factors
Stress granule specific factors
102489005 (PABPC1)
Spliceosome [BR:
tup03041
]
Complex C
Other components
Complex C specific factors
102489005 (PABPC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_10
RRM_occluded
RRM_3
YflT
Motif
Other DBs
NCBI-GeneID:
102489005
NCBI-ProteinID:
XP_014447551
LinkDB
All DBs
Position
Un
AA seq
636 aa
AA seq
DB search
MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ
QPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFS
AFGNILSCKVVCDENGSKGYGFVHFETQEAAERVSEKMNGMLLNDRKVFVGRFKSRKERE
AELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFER
HEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKN
LDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT
KPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRA
AYYPPSQIAQLRPSPRWTAQGARPHPFQNMPGAIRPAAPRPPFSTMRPASSQVPRVMSTQ
RVANTSTQTMGPRPAAAAAAATPAVRTVPQYKYAAGVRNPQQHLNAQPQVTMQQPAVHVQ
GQEPLTASMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESP
ESLRSKVDEAVAVLQAHQAKEAAQKAVNSATGVPTV
NT seq
1911 nt
NT seq
+upstream
nt +downstream
nt
atgaaccccagcgcccccagctaccccatggcctctctctacgtgggggacctacacccc
gacgtgaccgaggcgatgctctacgagaagttcagcccggccgggcccatcctctccatc
cgggtctgcagggacatgatcacccgccgctccttgggctacgcatatgtgaacttccag
cagccggcggacgcggaacgtgcattggacaccatgaattttgatgttataaagggcaag
ccagtacgcatcatgtggtctcagcgtgatccatcacttcgcaaaagtggagtgggcaac
atattcattaaaaatttggataaatccattgataataaagcactgtatgatacattttct
gcttttggtaacatcctttcatgtaaggtggtttgtgatgaaaatggttccaagggctat
ggatttgtgcactttgagacacaggaagctgctgaaagagtgagtgaaaaaatgaatggg
atgcttctaaatgatcgcaaagtattcgttggacgatttaagtctcgtaaagaacgagaa
gcagaacttggagctagggcaaaagagttcaccaatgtttacatcaagaattttggagaa
gacatggatgatgagcgccttaaggatctctttggcaagtttggacctgccttaagtgtt
aaagtaatgactgacgaaagtggaaaatccaaaggatttggatttgtaagctttgaaagg
catgaagatgcacagaaagctgtggatgagatgaacggaaaggagctcaatggaaaacaa
atatacgttggtcgagctcagaaaaaagtggaacggcagacggaacttaagcgcaaattt
gagcagatgaagcaagataggatcaccagataccagggtgttaacctttatgtgaaaaat
cttgatgatggtattgatgatgaacgtctccggaaagagttttctccatttggtacaatc
actagtgcaaaggttatgatggagggtggtcgcagcaaagggtttggttttgtgtgtttc
tcctccccagaagaagccactaaagcagttacagaaatgaatggtagaatcgtggccacc
aagccattgtatgtagctttagctcagcgcaaagaagagcgccaggctcacctcactaac
cagtatatgcagaggatggcaagtgtacgagctgtgcccaaccccgtaatcaacccctac
cagccagcgcctccttcaggttacttcatggcagctatcccccagactcagaaccgtgct
gcatactatcctcctagccaaattgctcaactaagaccaagtcctcgctggactgctcag
ggtgccagacctcatccattccaaaatatgcccggtgctatccgcccagccgctcctaga
ccaccatttagtactatgagaccagcttcttcacaggttccacgagtcatgtcaacacaa
cgtgttgctaacacatcaacacagacaatgggtccacgtcctgcagctgctgctgctgca
gctactcctgctgtccgcaccgttccacaatataaatatgctgcgggagttcgcaatcct
caacaacatcttaatgcacagccgcaagttaccatgcaacagcctgctgttcatgtacaa
ggtcaggaacctttgactgcttccatgttggcatctgcccctcctcaagagcaaaagcaa
atgttgggtgaacggctgtttcctcttattcaagccatgcaccctactcttgctggtaaa
atcactggcatgttgttggagattgataattcagaacttcttcatatgcttgagtctcca
gagtctcttcgttctaaggttgatgaagctgtagcagtactacaagcccaccaagctaaa
gaggctgcccagaaagcagttaacagtgccactggtgttccaactgtttaa
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