KEGG   Tupaia chinensis (Chinese tree shrew): 102491257
Entry
102491257         CDS       T02978                                 
Symbol
YTHDC2
Name
(RefSeq) YTH domain containing 2
  KO
K20099  ATP-dependent RNA helicase YTHDC2 [EC:5.6.2.6]
Organism
tup  Tupaia chinensis (Chinese tree shrew)
Brite
KEGG Orthology (KO) [BR:tup00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:tup03041]
    102491257 (YTHDC2)
Enzymes [BR:tup01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     102491257 (YTHDC2)
Spliceosome [BR:tup03041]
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   RNA helicase-like proteins
    102491257 (YTHDC2)
SSDB
Motif
Pfam: YTH OB_NTP_bind HA2_C Helicase_C R3H DEAD HA2_N Ank_2 AAA_19 nSTAND3 AAA_22 Ank ATPase PhoH AAA_16 AAA_7 AAA_23 Ank_4 UvrD-helicase AAA_29 ABC_tran T2SSE SRP54
Other DBs
NCBI-GeneID: 102491257
NCBI-ProteinID: XP_006146958
LinkDB
Position
Un
AA seq 1426 aa
MSRPSSVSPRPPAPGGGGPGGGPGGGGRAKGLKDIRIDEEVKIAVNIALERFRYGDQREM
EFPSSLTSTERAFIHRLSQSLGLVSKSKGKGANRYLTVRKKDGSETAHAMMTCNLTHNTK
HAVRSLIQRFPVTNKERTELLPKTERGNVFAVEAENREMSKTSGRLNNGIPQTPVRRGES
EFDSFRQSLPVFEKQEEIVKIIKENKVVLIVGETGSGKTTQIPQFLLDDCFKNGIPCRIF
CTQPRRLAAIAVAERVAAERRERIGQTIGYQIRLESRVSPKTLLTFCTNGVLLRTLMAGD
STLSTVTHVIVDEVHERDRFSDFLLTKLRDLLQKHPTLKLILSSAALDVNLFIRYFGSCP
VIYIQGRPFEVKEMFLEDILRTTGYTNKEMLKYKKEKQREEKQQTTLTEWYSAQENTFKP
ESQRQRSVPSVTEEYDLLDDGGDAVFSQLTEKDVNCLEPWLIKEMDACLSDIWLHRDVDA
FAQVFHLILTENVSVDYRHSETSATALMVAAGRGFASQVEQLISMGANVHRKASNGWMAL
DWAKHFGQTEIVDLLESYSASLEFGNLDESSLVQTNGSDLSAEDRELLKAYHHSFDDEKV
DLDLIMHLLYNVCHSCDAGAVLIFLPGYDEIVGLRDRILFDDKRFADNAQRYQVFMLHSN
MQTSDQKKVLKNPPAGVRKIILSTNIAETSITVNDVVFVIDSGKVKEKSFDALNFVTMLK
MVWISKASAIQRKGRAGRCRPGICFRLFSRLRFQNMLEFQTPELLRMPLQELCLHTKLLA
PVNCPIADFLMKAPEPPPALIVRNAVQMLKTIDAMDAWEDLTELGYHLADLPVEPHLGKM
VLCAVVLKCLDPILTIACTLAYRDPFVLPAQASQKRAAMLCRRRFTAGTFSDHMALLRAF
QAWQKARSDGWERAFCEKNFLSQATMEIIIGMRTQLLGQLRASGFVRARGGGDIRDVNTN
SENWAVVKAALVAGMYPNLVHVDRENVVLTGPKEKKVRFHPTSVLSQPQYKKIPPANGQA
AAIQALPTDWLIYDEMTRAHRIANIRCCSAVTPVTVLVFCGPARLASNALQEPSSFRADG
IPNDSSDSEMEDRTTANLASLKLDEWLSFKLEPEAASLLLQLRQKWHNLFLRRMRAPSKP
WSQVDEATIRAVIAVLSTEEQSAGLQQPSGIGQRPRPMSSEELPLASSWRSNNSRKSTAD
TEFSEESTSAERVLMKSPSSALHPPQKYKDRGILHPKRGTDDRSDQSSVKSTDSNSYPSP
CASPSPPSSGKGSKSPSPRPNMPVRYFIMKSSNLRNLEISQQKGIWSTTPSNERKLNRAF
WESSMVYLVFSVQGSGHFQGFSRMSSEIGREKSQDWGSAGLGGVFKVEWIRKESLPFQFA
HHLLNPWNDNKKVQISRDGQELEPQVGEQLLQLWERLPLGEKATAD
NT seq 4281 nt   +upstreamnt  +downstreamnt
atgtccaggccgagcagcgtctccccgcggccgccggctcctggcgggggcggcccggga
gggggcccaggcggcggcggccgggccaaggggctgaaggacatccgcatcgacgaggag
gtgaagatcgcggtcaacatcgccctggagcgcttccgctatggggaccagcgagaaatg
gaattcccttcttctttgaccagtactgaaagagcttttattcatcgactcagtcagtct
ctcggcttggtctctaaaagtaaaggaaagggagcaaatagatacctgactgtgaggaag
aaggatggatcagaaacagctcatgcaatgatgacctgtaatttgacccataatacaaag
catgctgtgaggagcctaattcagaggtttcctgtcaccaataaagagcgcaccgagctc
ctgcctaaaacagaaagaggaaacgtgtttgcagttgaagctgaaaaccgagaaatgagc
aagacaagtgggcgactcaacaacggcatacctcagactccagtgagaagaggagagtct
gaatttgattctttcaggcagtctttgccagtgtttgagaaacaggaagaaattgttaaa
ataattaaggaaaataaagtagtcttgatagtaggagaaaccggatctggaaagaccaca
cagattccgcagttcctcttggatgactgctttaaaaatggaatcccctgccgtatattt
tgtactcagccaagaaggttagcagcgattgctgtggctgaacgagttgctgcagagaga
agggagaggatcggacaaacaattggttatcagatccgactagaaagcagggtttctcca
aagacacttctgacattttgcactaatggagtattgcttcgcacgttgatggcaggagat
agtacattatcaactgtgacccatgttattgtggatgaagtgcatgaaagggatcgattt
agcgattttttacttacaaagttaagagatttgttgcaaaaacacccaactttgaaactg
atcctttctagtgctgccttggatgttaatctctttataagatactttggaagttgtcca
gttatatatatacagggaagaccatttgaagtaaaagaaatgtttctggaagatatttta
agaacgactggatatacgaacaaggaaatgttgaagtacaaaaaggaaaagcagcgagag
gagaaacaacaaaccacacttacagagtggtactcagctcaggagaatacattcaagcct
gaatctcagaggcagagaagtgttcccagtgtgactgaagagtatgatttactggatgat
ggtggtgatgctgtcttcagccagttgacagaaaaagatgtgaattgccttgaaccatgg
ctaataaaagaaatggatgcttgtctctctgacatttggctgcatagagatgttgacgcc
tttgctcaagtctttcaccttattttaactgaaaatgttagtgtggattacaggcacagt
gagaccagtgccacagctctgatggttgctgcaggtcggggttttgcaagtcaggtggag
cagttgattagcatgggagccaacgtccataggaaagcgtccaacggctggatggcttta
gattgggctaaacattttgggcagaccgaaattgtggatcttctagaatcttacagtgct
tcattggaatttggaaatcttgatgaaagttctctggtccagacaaatgggagtgacctc
agtgcagaagacagagagctcctgaaagcttatcatcatagtttcgatgatgaaaaagta
gacttggacttgatcatgcatcttctatataatgtctgccatagttgtgatgccggtgca
gtattaattttcttacctggatatgatgagattgttggactgagggaccgcatcctgttt
gatgataagcgttttgctgacaatgcacaaagatatcaagtcttcatgcttcattcaaat
atgcaaacgtctgatcaaaagaaggtcttaaaaaaccctcccgcaggtgttcgaaaaata
atcctctctaccaacattgctgagaccagcatcacagtcaatgacgtcgtctttgtcatt
gattctggtaaggtgaaagagaaatcctttgatgcactgaattttgttacaatgttaaaa
atggtgtggatttccaaagctagtgccatacagcgaaaaggcagggcgggccgatgtcgg
cctggaatttgtttccgtctcttcagtagactccgattccaaaacatgttggaatttcag
actccagaacttttgaggatgccattacaggaactttgtttacacaccaagttgttagca
ccagttaattgtcccattgctgatttccttatgaaagctcctgaacctcctccggcttta
attgtaagaaatgctgtacagatgcttaagacaatcgatgccatggatgcgtgggaagac
ctgaccgaacttgggtaccacctggccgacttgccagtagagccgcaccttggtaaaatg
gtcctgtgtgctgtcgtcttgaagtgtctggaccccattctcacgattgcctgcacgcta
gcctaccgggacccttttgttctgcctgcccaggcctcccagaagcgtgccgcgatgctg
tgtcggaggcgcttcactgcagggacgttcagtgaccacatggccctcctgagggcgttc
caggcatggcagaaagcacgaagtgatgggtgggagcgagccttttgtgaaaagaatttt
ctttcacaagctaccatggaaataatcataggcatgagaacgcagttacttggtcagctt
agagcatcaggttttgttagagcacgaggtggtggtgatattcgagatgtgaacacgaac
tctgagaactgggctgtcgttaaagctgcgttggtggcaggcatgtatcctaatttagtc
catgtggacagagagaatgtagtattgacagggccaaaggagaaaaaagtacgatttcat
cccacttcagttctcagtcagcctcaatataaaaagatccctccagctaatggtcaagct
gccgcaatccaggcactgcccacagattggctcatttatgatgaaatgaccagagcccac
cgaatagctaacattcgatgttgttcagcagtgacacccgtcacggtgttggtgttctgt
ggaccagctaggctggcaagtaatgcccttcaggaaccttcgtcctttagagcggatggc
attccgaatgacagtagtgacagtgagatggaggacagaactactgctaatttggcatct
ttgaaacttgacgaatggctcagtttcaaattagaaccagaggcagccagcttattgctg
cagctccgacagaagtggcataacttatttctacgccgaatgagagctccctctaaacct
tggtctcaagtggatgaagctaccataagagcagttatagctgtcttaagcactgaagaa
cagtctgcaggtttacagcaaccatccgggattggccaaaggccacggcccatgtcatcc
gaagaacttcctttggcttcatcttggaggtcaaataatagtaggaaaagtacagcagat
actgaattttctgaggagtctaccagtgctgaaagagtgttgatgaaatctccgtcttca
gcattacacccacctcagaagtacaaagacagaggaattttacatcccaaacgaggcacc
gatgaccgatcagatcaatcttctgtgaaatctacagatagcaatagttacccaagtcct
tgtgctagtccttctcctccgtcctcaggaaagggttccaaatctccttcaccaagacca
aacatgcctgttcggtacttcataatgaagagtagcaatttaagaaacctcgaaatttct
caacagaaaggtatctggtctacaacccctagtaatgagcggaagctgaatcgagccttt
tgggaaagcagcatggtttacttagtcttttctgttcaaggatctggacatttccaggga
ttttctaggatgtcttccgagataggaagggagaagagccaggactggggttcggctggc
ctaggaggagtgtttaaggtggagtggatcagaaaagaaagcctgccctttcagtttgca
catcatttactcaatccttggaacgacaataagaaagttcagataagcagagatgggcag
gaactagaacctcaggttggtgaacagttgctccagttatgggaacgccttcctctagga
gaaaaagccacagctgattga

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