Tupaia chinensis (Chinese tree shrew): 102492421
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Entry
102492421 CDS
T02978
Symbol
BRIP1
Name
(RefSeq) BRCA1 interacting protein C-terminal helicase 1
KO
K15362
fanconi anemia group J protein [EC:
5.6.2.3
]
Organism
tup
Tupaia chinensis (Chinese tree shrew)
Pathway
tup03440
Homologous recombination
tup03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
tup00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
102492421 (BRIP1)
03460 Fanconi anemia pathway
102492421 (BRIP1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tup03400
]
102492421 (BRIP1)
Enzymes [BR:
tup01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
102492421 (BRIP1)
DNA repair and recombination proteins [BR:
tup03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
102492421 (BRIP1)
FA (Fanconi anemia) pathway
Downstream FA components
102492421 (BRIP1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD_2
Helicase_C_2
DEAD
ResIII
IGR
DUF1599
DUF2182
Motif
Other DBs
NCBI-GeneID:
102492421
NCBI-ProteinID:
XP_014439207
LinkDB
All DBs
Position
Un
AA seq
1350 aa
AA seq
DB search
MSSMWSEYTIGGVKISFPCKAYPSQLAMMNSIVRGLNGKQHCLLESPTGSGKSLALLCSA
LAWQQSFSGKPGDEGSSKKTEVGLSCCCTCHSKNFTNNDMDQGTSPHFIGPSTPPSKRSG
TSSTCQDSPGKNTLAAKLSAKKQAFIYSDENDDFQVEKKRIRPLETTQQIRKRHCAEKEV
HHLDENVASAKPIKLNSPLGKIISLQNSPGHCSLCCCSTKQRNSQESSSTSKKDPGGKSK
IPKIYFGTRTHKQIAQITRELRRTAYSGVPMTILSSRDHTCVHPEVVGNFNRNEKCMELL
DGKDGKSCYFYHGVHKISDQHTLQTLQGMCKAWDIEELVNLGKKLKACPYYTARELIEDA
DIIFCPYNYLLDAQIRESMDINLKEQVVILDEAHNIEDCARESASYSVTEVQLRFARDEL
DSLVNSNIRKKDHEPLRAVCYSLINWLEANSEHLVERDYESSCKIWSGNEMLLNLHKMGI
TTATFPILQGHFSAVLQKEEKVSSIHSKEEAREIPIISAATQIMLKGLFMVLDYLFRQNS
RFADDYKIAIQQTYSWINHTDISDKNWLMVLPKNKKRSRHKTAVRVLNFWCLNPAVAFSD
INGKVRTIVLTSGTLSPMKSFSSELGVTFTIQLEANHVINNSQVWVGTIGSGPKGRNLCA
TFQHTETFEFQDEVGDLLLSVCQTVSQGILCFLPSYKLLEKLKDRWQYTGLWHNLELVKT
VIVEPQGGEKTDFDELLQVYYDAIKYRGEKDGALLVAVCRGKVSEGLDFSDDNARAVITI
GIPFPNVKGLQVELKRQYNDHHSKLRGLLPGRQWYEIQAYRALNQALGRCIRHKDDWGAL
ILVDDRFRSNPDRYISGLSKWVRQQIQHHSTFESALESLAEFSRKHQKVIDVSKKNRKYI
QDESVLEESCSKDNIPAILLEAASHLSPENPKEDQATVCVQELRHPKVMIQNLSLPSGII
SGKEKNDPVLLEESVQAKKAEKNVISRSTSPTFNKQAKRVSWSSFDSLGQYFTGKMLPVS
PGLRTSENCTFSDSTFKPLKMESKTVLPLANKCESSNLIVNTSSGPCPQPGTIISSLMID
ATLTKKNCSKQPLCCEESLELNTEFSLVNNETEHSTSNGAFETEAEDESIYFTPELYDPA
DTDEEKGELVESNKGNILANNSNCILAEDLFEIRTVKEVDSVREMKVEDHTDTKFNRIMN
IEESKIDDIDDNIKKTCIKELELGETHRMYRKTFKQSPSKNKGLRVCRTYRPRTRKTTCW
RKGFIHGRKDPSNMPCQSGLYCIACGTELLSNVEGGLFKKAFSKNAGLIKIQGIFMNVKL
NCTKSLCHCLNESENRLEEDVFYVIDDSDA
NT seq
4050 nt
NT seq
+upstream
nt +downstream
nt
atgtcttcaatgtggtctgaatatacaattggaggagtaaagatcagctttccttgtaaa
gcttacccatcccagcttgctatgatgaattctattgtccgaggattaaatggtaagcaa
cactgtttgctggagagccccacaggaagtggaaaaagcttagctttactttgttctgca
ttagcatggcaacagtcttttagtgggaaaccaggagatgaagggtcaagtaaaaaaact
gaagtaggattgtcatgctgttgtacatgccattcaaagaattttacaaacaatgacatg
gaccaaggaacttcacctcattttatcggtccaagcacaccaccttctaaaagaagtggc
acttcctcaacttgtcaagactctcctggaaaaaatactctggctgcaaagttatctgcc
aagaaacaggcattcatttacagtgatgaaaatgatgattttcaagtagagaagaaaaga
attcgacctttggaaactacacagcagattagaaaacgtcattgtgctgaaaaggaagta
caccatttggatgaaaatgttgcttctgcaaagcccataaaactcaattctccattagga
aagataatttctctacaaaattcgcctggtcactgttctctgtgctgttgttccactaaa
caacgaaacagtcaagagtcttcaagtaccagtaagaaggatcctggggggaaatctaag
atacccaaaatatattttgggactcgcacacacaagcagattgctcagattaccagagag
ctccggaggacagcatactcaggggtcccaatgactattctatccagcagggatcatact
tgtgtccatcctgaagtagtcggtaacttcaacagaaatgaaaagtgtatggaattgctg
gatggaaaagatgggaaatcctgctatttctatcatggtgttcataaaatcagtgatcaa
cacacgttacagactctccaaggaatgtgcaaagcctgggatatagaagaacttgttaat
ttggggaaaaaactaaaggcttgtccatattatacagcccgagaactaatagaagatgcg
gacataatattttgtccctacaactatcttctagatgcccaaataagggaaagtatggat
ataaatctgaaggaacaggttgtcattttagatgaagctcataacattgaggattgtgcc
cgggaatcagcaagttacagtgtaacagaagttcagcttcgatttgctcgagatgaacta
gatagtttggtcaacagtaatataaggaagaaagaccatgaacccctacgagctgtgtgc
tatagcctcattaattggttagaagcgaattctgaacatcttgtggaaagagattatgag
tcatcttgtaaaatatggagtggaaatgaaatgctcttaaatttacacaaaatgggcatc
accactgctacttttcccattttgcagggacatttttctgctgttcttcaaaaagaagaa
aaagtctcatcaattcatagtaaagaagaggcaagagaaatacctatcattagtgccgca
actcaaataatgctcaaaggactttttatggtgctcgactatctttttaggcaaaatagc
agatttgcagatgattataaaattgctattcagcagacttactcctggataaatcacact
gatatttcagataaaaattggctaatggttctaccaaaaaataagaaacgttcacgacac
aaaactgcagttcgtgtgctaaacttttggtgcttaaatccagctgtggccttttcagat
attaatggcaaagttcggacaattgttttgacatctggtacgttatcaccaatgaaatcc
ttttcatcagaacttggtgttacatttactatccaactggaggctaatcatgtcattaat
aactcacaggtttgggttggtaccattggatcaggccccaagggtcggaatctctgtgct
accttccaacatactgaaacatttgagtttcaggatgaagtgggagatcttttgttatct
gtgtgccaaactgtgagccaaggaattttgtgtttcttgccatcttacaagttattagaa
aaattaaaggatcgttggcaatatactggtttatggcataatctggagttggtgaagaca
gtcattgtagaaccacaaggaggagaaaaaactgattttgatgaattactacaggtatac
tatgatgcaatcaagtacagaggagagaaagatggagccctccttgtagcagtctgtcgt
ggtaaagtgagtgagggtctggatttttcagatgacaatgcccgtgctgtcataacaata
ggaattccttttccaaatgtgaaaggtctacaggttgaactaaagcgacagtacaatgac
catcattcaaaattgagaggtcttttacctggccgtcagtggtatgaaattcaagcatac
agggccttaaaccaggccctaggtaggtgtattcgacacaaagatgattggggagcgctt
attctggtggatgatcgctttaggagcaacccagatcgctatatatctggactttctaaa
tgggttcggcagcaaattcagcaccattcaacatttgaaagtgcactggagtccttggct
gaattttccagaaagcaccaaaaagtcattgatgtatccaaaaagaatagaaagtatata
caggatgagtctgtgcttgaagaatcctgttcgaaggacaatatcccagccatcttactg
gaagcagcaagtcacctatcaccagaaaatcctaaggaagatcaagcaacagtgtgtgtc
caagaattacgacatcctaaagtgatgattcaaaatctgtctctaccaagtggcatcatc
tctggaaaagagaaaaatgatccagtattattggaagagtctgtccaggcaaagaaagca
gaaaaaaatgtgatttccagatctacaagcccaactttcaacaaacaagcaaagagagtt
agctggtccagctttgattctttgggtcagtattttactggtaaaatgctccctgtatca
cctgggcttaggacatcagagaattgtacctttagtgattctactttcaaaccattaaag
atggaaagtaaaactgttttgccattagccaataaatgtgagtcctcaaatctgatagta
aacacatcatctggaccatgtcctcaaccaggaaccattatttcatcacttatgattgat
gctactcttactaaaaaaaactgttccaaacaaccactctgctgtgaagaatccttggag
ttaaatactgaattttctctggtaaataatgaaactgaacattctacttcaaatggagct
tttgaaacagaggcggaagatgaatctatctattttacacctgaactttatgatcctgca
gatacagatgaagaaaaaggtgaactagttgaaagtaataaaggcaatatattggctaat
aattcaaattgcattttagctgaagacctttttgaaattagaactgtgaaagaagtggat
tcagtcagagaaatgaaagtggaggatcacacagacacaaagtttaatagaatcatgaat
atcgaagaaagcaaaattgatgacattgatgataatataaaaaaaacttgtataaaggaa
ttggaattgggagaaactcatagaatgtatagaaaaacttttaaacagtctccttccaaa
aacaaagggctgagagtatgtagaacatacaggccacgaaccaggaaaactacctgttgg
agaaagggttttattcatggaagaaaggacccaagtaatatgccttgccagtcaggactc
tattgtattgcttgtggaactgaattattatctaatgtggaaggaggactatttaaaaaa
gctttttccaagaatgctgggctaataaaaatccaaggaatctttatgaatgttaaatta
aattgcacaaagtccctatgccattgcttaaatgaatcagagaacagattagaagaagat
gtattttatgtcatcgatgacagtgatgca
DBGET
integrated database retrieval system
