Tupaia chinensis (Chinese tree shrew): 102496289
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Entry
102496289 CDS
T02978
Symbol
COL18A1
Name
(RefSeq) collagen type XVIII alpha 1 chain
KO
K06823
collagen type XVIII alpha
Organism
tup
Tupaia chinensis (Chinese tree shrew)
Pathway
tup04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
tup00001
]
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
102496289 (COL18A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
tup04147
]
102496289 (COL18A1)
00535 Proteoglycans [BR:
tup00535
]
102496289 (COL18A1)
00536 Glycosaminoglycan binding proteins [BR:
tup00536
]
102496289 (COL18A1)
Exosome [BR:
tup04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
102496289 (COL18A1)
Proteoglycans [BR:
tup00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
102496289 (COL18A1)
Glycosaminoglycan binding proteins [BR:
tup00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
102496289 (COL18A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Endostatin
Collagen
DUF959
Collagen_trimer
Fz
Laminin_G_3
Laminin_G_2
DUF1554
Motif
Other DBs
NCBI-GeneID:
102496289
NCBI-ProteinID:
XP_014440013
LinkDB
All DBs
Position
Un
AA seq
1832 aa
AA seq
DB search
MGVVDKKASLEGGLARYVLGDRAEKRMLHISARDLLGHQRSGDNSCLGLLLLLTGCLAPA
QADLLGLVWPWSTRTTGPTASLVSEPQGSPSVRPTADTTTHDVPQDGSLEQETTRASPGL
PLQGLASDWDRAPAAVAASAASPDMKEENIAGVGARILNVAQGIRSFVQLWEDTPPTERS
AEAETLASEIPTGTFDLPGSSSTPQENKTALWPSSIAPSSLGSQTTMAGTLPVPTQSPSS
LGRPQPPLRESSGRASLSVLGGAPPWGSQQSPGQPEDPNGEGLLRAAAGPIQQHRHPDIR
RLWPLLQPLVTGSLGTGSLSASTASSAHSSAPPAGSARIAVAALLGDSSAWASHVAHSAG
PGFANISALLGADPLAPAGHCLPLPSSLLVCGHLGIGHSWLPNHLQHQSSEEVEAAAQAW
EGLLRTRCHPFLTWFFCLLLAPPCGSGPLPALPPCRQFCEALEDACWGHLAGDRLPVPCA
SLPAQEDGDCVFIGPAAGNRPATSSPPFPFCLASLWILEMGSSHTMGTALPYPCNKLFGR
IFEHFIPEHVNEEVGLLQLLGEPPPQQVARIEDPEVGPAYVFGADASGGRAARFHFPSPF
FRDFSLLFHVRPAAPGSGVLFAITDAAQAVVLLGVKLSAVQDGHQYLTLLYTEPGASQTH
TAARFRLPTLVGQWTRLALSVDGSSVALYVDCEEVQRAPLARSSRGLELEPGAGLFVAQA
GEADPDKFQGMVAELRVRADPQVSPLHCLDEEDDDTDGASGDFGSGLEETQKSLREDTVA
AITPSLPRPPPVTSPPLAGGSSTEDSRMDEIEEETTESSLGAQTLPGSASVSTWDGSVPN
PGGDLEQGGLQGQKWELGTQGLPSPVGPQGPSGPVVQSPEAQPMPGPQGPPGPPGLPGKD
GTPGKDGEPGDPGEDGRPGDTGPQGFPGTPGEVGPKGEKGDPGVGSRGPPGPQGPPGPPG
PSFRHDKLTFIDMEGSGFGGDLETLRGPRGFPGPPGPPGVPGLPGEPGRFGTNSSISPGP
AGLPGVPGRDGPRGFPGLPGPPGPPGREGQPGETGQKGSIGEAGAPGPKGSKGDPGPVGA
PGENGLAGPPGPAGPQGPPGPPGPPGPGFAAGFDDMEGSGGPFLAAARGVEGPQGLPGLP
GLKGDPGPAGSPGIKGEVGANGAPGPPGLPGREGTAGPQGPKGDKGSQGEKGDPGKDGVG
HPGLPGPPGPPGPVVYVSEKDSAVASVPGPEGRQGYAGFPGPAGPKGDLGSKGERGFPGP
KGEKGEPGSIFSPDGRALALAQKGAKGEPGFRGPPGPYGRPGYKGEIGFPGRPGRPGMNG
LKGEKGEPGDASTGFSMRGMPGPPGPPGPPGPPGTPVYDSNAFVESGRPGPPGLPGYQGP
PGAKGDKGEVGPPGPPGQFPIDLLHLEAEMKGEKGERGDTGQKGERGEPGGGGFFSSSVP
GPPGPPGPPGYPGIPGPKGESIRGQPGPPGPQGPPGIGYEGRQGPPGPPGPPGPPSFPGP
HRQTISVPGPPGPPGPPGPPGAMGASSGQVRIWASYQAMLGKVHEVPEGWLLFVAEREEL
FVRVRNGFRKVLLEDRTPLPGGMPPVVQLHQGNPYPKREQPHSTLRPWRADDFLANPPRL
PNPQPYPGVPYHGSYVHLRPAHPTSSPAHTHQDFQPVLHLVALNGPLSGGMRGIRGADFQ
CFQQARAVGLAGTFRAFLSSRLQDLYSIVRRADRGAVPIVNLKDEVLFPNWEALFSGSEG
QLPPAARIFSFDGRDVLRHPAWPQKSVWHGSDPSGRRLTESYCETWRTEAASATGQASSL
LAGRLLGQEAVSCQNAYVVLCIENSFMSSSSK
NT seq
5499 nt
NT seq
+upstream
nt +downstream
nt
atgggtgtcgtggacaagaaggcttctctggaaggagggctggcccgctatgtgctggga
gacagagcagagaaacgtatgctgcacatttcagcccgagacttgctggggcaccagcgc
tctggggacaacagctgcctgggcctgctgctgctgctcactggctgtctcgcgcctgcc
caggctgacctgctgggcctggtctggccgtggtccactaggaccacaggccccacagcc
tcactggtctctgagccccagggcagcccatctgtgcggcccactgcagataccaccaca
catgatgtcccccaagatggctccttggaacaagagacaactcgtgccagccctgggttg
cccttgcaggggctggcgtctgactgggacagggcccccgctgctgtggctgcctctgct
gcaagtcccgacatgaaggaggagaacatcgcaggcgtcggagccagaatcctgaatgtg
gctcagggtatccggagcttcgtccagctgtgggaggacacccctcccaccgagcgttcc
gctgaagcagagacgctggcctccgagatccccacgggcacctttgacctcccagggtcc
tccagcacccctcaggagaacaagaccgctctctggcctagcagcattgctccaagctcc
ctgggctcccagacaaccatggctggcaccctgccagtgcccactcagtcaccttcctcc
ctgggcagaccccagccaccactcagggagtcatcaggtagagcttctctctctgtgctg
ggcggggcccctccctggggaagccagcagtccccaggccaacctgaggatccgaatggt
gaaggactcctgcgtgcagcagccggtcccatccagcagcaccgacatcctgacatccgc
agactctggccccttctgcaacctctggtgacgggttctctgggcacgggttctctgagt
gcgtccacggcctcctctgctcactcctctgcacctccggccgggtcggctcgaattgca
gttgcagctttacttggggacagcagcgcttgggcttcccacgtggctcactctgcgggg
cctggttttgctaatatctctgctctgctcggggctgaccccctggcccctgccggccac
tgcctgcccctgccgtcctccctcctggtctgcggccacctgggcattgggcactcctgg
ctgcccaaccacctccagcaccagagcagtgaagaggtggaggctgctgcacaggcctgg
gagggcctccttcggactcgctgccaccccttcctcacctggttcttctgcctgctgctg
gccccaccatgcggctctgggcccctgcctgccctgccaccctgccgccagttctgtgag
gccttggaggatgcatgctggggccacctggcaggggaccggcttccagtcccttgtgcc
tcactcccagcccaggaggatggggactgcgtgttcattgggccggcagcaggtaaccgg
ccggccacgtcctccccaccctttcctttttgccttgccagtttgtggattctggagatg
ggtagcagccataccatgggtactgccttgccttatccttgcaacaagctgtttggcaga
atctttgaacattttataccagagcatgtcaacgaggaggtggggctgctgcagcttctc
ggggagcctccaccccaacaggtggcccggatcgaggaccccgaagtagggccggcctat
gtcttcggagcagatgccagcggtggccgtgcagcacggttccacttccccagccccttc
ttccgtgatttctcgctgctgtttcatgtgcggccagctgcaccgggctcaggggtgctg
tttgccatcacagatgcagcacaggctgtggtcttgctgggcgtgaagctctcagcagta
caggatgggcaccaatacctgacgctgctctacactgagccgggtgccagtcagactcac
acagctgcccgcttccgcctgcccaccctggttggccagtggacgcgccttgcactcagc
gtggatggcagctccgtggcactctacgtggactgcgaggaggtccagagggcaccactg
gctcgatcttcacggggcctggagctggagcctggagctggcctctttgtggcccaggcc
ggcgaagcagatcctgacaagttccaggggatggttgcggagctgcgggtgcgtgcggac
ccccaggtgagccccctgcactgcctggacgaggaagatgatgacacggatggggcgtct
ggagacttcgggagtgggcttgaggagacccagaagtcgctcagggaggacacagttgca
gccataacgcccagcctccccaggccaccaccggtcacatctccacctttggccgggggc
agtagcacagaagattccagaatggatgaaattgaagaagaaaccacagagtcttcatta
ggagcccagacccttcctggctcagcctcagtttccacatgggacgggagtgtcccgaac
cctgggggtgacctggaacagggaggcctgcaggggcagaagtgggagctgggcacccag
ggcctgcccagccctgttggccctcagggtccttcaggcccagtggtgcagagcccggag
gcacagcccatgcctgggccacagggaccccccggacccccagggctgccagggaaagat
ggcaccccaggaaaggatggtgagccgggtgacccgggcgaagatggaagaccgggtgac
acagggccacagggtttcccaggcactccaggagaggtgggccccaaaggtgagaagggg
gatcctggagttgggtcaagaggacctccaggaccccaagggcctccagggccaccggga
ccgtccttcagacacgacaagctgactttcattgacatggaggggtctggcttcgggggt
gacctggagaccctcaggggcccacgaggcttccccggccctccggggcccccaggagtg
ccaggcctgcccggtgagccaggccgttttggaacgaacagctccatctctccaggacct
gcaggccttcctggtgtgcctggacgggatggaccccgcggctttcctggcctcccaggg
cccccaggtcctccaggacgggagggacaaccaggagagactggccagaaaggcagcatc
ggtgaagcaggcgccccaggacccaagggcagcaagggagatccaggccctgttggtgct
cctggggagaacggcttggcaggacccccgggaccggctggaccacagggaccccctgga
ccccctggaccaccaggaccaggattcgctgctggatttgatgacatggaaggctccggg
ggaccttttttggcagcagcccgaggagtggaagggccacagggactgcctggcctacca
ggactgaagggggatcctggaccagctgggtcacctgggattaagggagaagttggagca
aacggagcccctgggcccccaggcctccccggcagagagggcactgctggcccccagggg
ccaaaaggagataaaggaagccagggagaaaaaggtgacccagggaaggacggagtgggg
catccaggcctccccgggccccctggaccccctggacctgtggtctacgtgtcagagaag
gacagcgcagtggccagtgtgccaggacccgagggccggcaggggtacgcaggctttcct
ggacctgctgggccgaagggtgacctgggctccaaaggcgagcggggcttcccgggaccc
aagggtgaaaagggtgaacctggcagtatcttcagtcctgatggcagagctctggccctc
gcccagaaaggagccaagggagagccaggcttccgaggacccccgggtccatacggacgg
cctgggtacaagggagagatcggcttccctggacggccgggccgccctggcatgaatgga
ttaaaaggagagaaaggggagccaggagatgccagcactggattcagcatgaggggaatg
cccggacccccaggccctccaggacccccaggccctcctgggactcctgtctatgacagc
aacgcctttgtggagtcaggacgccctgggcctccaggactgccagggtaccaggggcct
cctggagcaaaaggtgacaaaggagaagtgggcccacccggaccaccagggcagttcccg
attgacctgcttcacttggaggctgagatgaagggggagaagggagaacgaggggacact
ggacagaaaggggaaaggggggagcctggtggcggtggcttcttcagctcaagtgtgcct
ggcccccctggccctccaggccccccgggctaccctgggattccgggtcccaagggagag
agcatccgaggtcagcccggcccacctggacctcagggaccccctggcattggttatgag
ggacgccagggccctcctgggccccccggccctccaggacccccttcgtttcctggccct
cacagacagaccatcagtgtccctgggcctccaggccctcctggccctccagggcctcct
ggagccatgggcgcctcctcagggcaggtgaggatctgggcctcgtaccaggccatgctg
ggcaaggtgcatgaggtgcctgagggctggctgctcttcgtggcagagagggaggagctc
tttgtccgtgtccggaatggattccggaaggtcctgctggaggaccgaacaccacttcca
ggtgggatgccccctgtggtgcagctacaccagggcaacccataccccaagagagagcaa
ccccactccactctgcggccctggagggcagatgacttcctggccaatcccccgcgcctg
ccaaatccccagccctaccctggagttccgtaccatggctcctacgtgcacctcaggcca
gcacaccccacgagctctcctgctcatacgcaccaggacttccagccagtgttgcacctg
gtggcactcaacggcccgctgtcaggcggcatgcgtggcatccgcggagccgacttccag
tgcttccagcaggcgcgtgccgtggggttggccggcaccttccgcgccttcttatcctcc
cggctgcaggacctttacagcatcgtgcgccgtgctgaccgtggggctgtgcccattgtc
aacctcaaggacgaagtgctgttccccaactgggaggccctgttctcaggctctgagggc
cagctgccacctgcagctcgcatcttctcttttgatggcagagacgtcctgaggcacccc
gcctggccccagaagagcgtgtggcacggttcagaccccagtggtcgccggctgactgag
agctactgtgagacgtggaggacagaggctgcctcagccacaggccaggcctcctcactg
ctggcaggcaggctgctggggcaggaggccgtgagctgccaaaatgcctatgttgtgctc
tgcatcgagaacagcttcatgagctcctcctccaagtag
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integrated database retrieval system
