Tupaia chinensis (Chinese tree shrew): 102498741
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Entry
102498741 CDS
T02978
Symbol
SKIV2L2
Name
(RefSeq) superkiller viralicidic activity 2-like 2
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
tup
Tupaia chinensis (Chinese tree shrew)
Pathway
tup03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tup00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
102498741 (SKIV2L2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tup03019
]
102498741 (SKIV2L2)
03041 Spliceosome [BR:
tup03041
]
102498741 (SKIV2L2)
03009 Ribosome biogenesis [BR:
tup03009
]
102498741 (SKIV2L2)
03016 Transfer RNA biogenesis [BR:
tup03016
]
102498741 (SKIV2L2)
Enzymes [BR:
tup01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
102498741 (SKIV2L2)
Messenger RNA biogenesis [BR:
tup03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
102498741 (SKIV2L2)
Spliceosome [BR:
tup03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
102498741 (SKIV2L2)
Complex C
U4/U6.U5 tri-SnRNP related factors
102498741 (SKIV2L2)
Ribosome biogenesis [BR:
tup03009
]
Eukaryotic type
Pre-60S particles
Helicases
102498741 (SKIV2L2)
Transfer RNA biogenesis [BR:
tup03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
102498741 (SKIV2L2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
AAA_22
Motif
Other DBs
NCBI-GeneID:
102498741
NCBI-ProteinID:
XP_014443484
LinkDB
All DBs
Position
Un
AA seq
1006 aa
AA seq
DB search
MADAFGDELFSVFEDDSTTAAGNKKDKEKEKGKLKGPPGSADKAGKRFDSKLQSESTNSG
KNKRDTDFEGTDEPIFGKRPRIEESITEDLSLADLMPRVKVQSVETVEGCTHEVALPADE
DYLPLKPRVGKAAKEYPFILDAFQREAIQCVDNNQSVLVSAHTSAGKTVCAEYAIALALR
EKQRVIFTSPIKALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGS
EVMREVAWVIFDEIHYMRDSERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLH
KQPCHVIYTDYRPTPLQHYIFPAGGDGLHLVVDENGDFREDNFNTAMQVLRDAGDLAKGD
QKGRKGGTKGPSNVFKIVKMIMERNFQPVIIFSFSKKDCEAYALQMTKLDFNTDEEKKMV
EEVFSNAIDCLSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALF
ATETFAMGINMPARTVLFTNARKFDGKDFRWISSGEYIQMSGRAGRRGMDDRGIVILMVD
EKMSPTVGKQLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRAIPG
VVEKVKNSEEQYNKIVIPNEESVVIYYKIRQQLAKLGKEIEEYIHKPKYCLPFLQPGRLV
KVKNEGDDFGWGVVVNFSKKSNVKPNSGELDPLYVVEVLLRCSKESLKNSATEAAKPAKP
DEKGEMQVVPVLVHLLSAISSVRLYIPKDLRPVDNRQSVLKSIQEVQKRFPDGVPLLDPI
DDMGIQDQGLKKVIQKVEAFEHRMYSHPLHNDPNLETVYTLCEKKAQIAIDIKSAKRELK
KARTVLQMDELKCRKRVLRRLGFATSSDVIEMKGRVACEISSADELLLTEMMFNGLFNDL
SAEQATALLSCFVFQENSSEMPKLTEQLAGPLRQMQECAKRIAKVSAEAKLEIDEETYLS
SFKPHLMDVVYTWATGATFAHICKMTDVFEGMVTFYIHVSFSDTKK
NT seq
3021 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgcgttcggggatgagctgtttagcgtgttcgaggatgattcaacgactgca
gctgggaacaaaaaagacaaagaaaaggagaaagggaaattgaaggggccgccaggatcg
gcagacaaggccgggaagcgttttgacagcaaattgcaatcagaatcaaccaacagtgga
aaaaacaaaagagatacagattttgaaggtacagatgaacccatttttggaaagaggccg
aggatagaagaatcaataactgaagacttgagtttggcagacctaatgcccagagtcaag
gtacaatcagttgaaactgttgaaggatgtacacatgaggttgcactccctgcagatgag
gattatttaccactgaaacctcgagttggaaaagctgcaaaggagtacccattcattctt
gatgcttttcaaagagaagccattcagtgtgttgataataatcaatccgttttagtatct
gcacatacatcagcaggaaaaactgtgtgtgctgagtatgcaattgcactggccttaaga
gaaaaacagcgagtaatatttaccagcccgattaaggctctgagtaatcagaaataccgg
gagatgtatgaagaatttcaggatgttggtctgatgactggagatgttactattaatcct
acagcatcttgtcttgttatgaccacagagattttaagaagtatgctgtacagaggttct
gaagttatgcgagaagttgcttgggtcatatttgatgaaattcattacatgagagattca
gagcgtggtgtagtatgggaagaaactattattttgcttcctgataatgtccactatgtc
tttctatcggctactattccaaatgcccgacaattcgccgaatggatttgccacttacat
aaacagccttgtcatgtaatttacacagattatcggcctactccattgcagcactacatc
ttcccagcagggggagatggcctacaccttgtggttgatgaaaatggtgacttcagagaa
gataattttaatactgcaatgcaagtgcttcgagatgcaggtgatctggcaaaaggagac
cagaaagggcggaaaggaggaacaaaaggaccatcaaatgtgttcaagattgtgaagatg
attatggaaagaaattttcaacctgtaattatttttagttttagtaaaaaggattgtgaa
gcctatgcacttcaaatgaccaaattagattttaacacagatgaagaaaagaagatggtt
gaagaagttttcagtaatgcaattgactgcttgtctgatgaagataaaaagctccctcaa
gttgaacatgtacttcctcttttgaaacgaggaattggtattcaccatggtggtttactt
cctattttgaaagaaactatagaaattctcttttctgaaggattgataaaggccttattt
gctacagagacgtttgctatgggaattaatatgccagctagaactgttttatttacaaat
gcccgcaagtttgatgggaaagatttcagatggatctcctcgggtgaatacattcagatg
tctggtcgtgcgggaagaaggggaatggatgatagaggaattgtaattctcatggtggat
gaaaagatgagcccaacagttggaaaacaactacttaagggctcagctgatcctctaaat
agtgctttccatttgacgtacaacatggttttgaacttattacgtgtagaagaaattaat
cctgagtacatgttggagaaatccttctatcagtttcagcattacagagcaattcccgga
gtagtagagaaggtaaagaactcagaagaacagtataataaaatagtaattcccaatgaa
gaaagtgtagtcatctattataagattaggcaacagcttgccaaactgggtaaagaaatt
gaggaatatattcacaaaccaaaatactgcttaccatttttacaaccaggtcgtttggta
aaggtgaagaatgaaggagatgactttggctggggagtagtagtgaatttctcaaaaaag
tcaaatgttaagcctaattctggtgaactggatcctttatatgtagtagaagtacttctg
cgctgtagcaaagagagcttgaaaaactcagctactgaggctgccaaaccagctaaacct
gatgaaaaaggagagatgcaggttgtcccagttttggtgcatctcctctctgctatcagc
agcgttaggctttacattcctaaagaccttcggccagtggacaacagacagagtgtttta
aaatcaatacaggaagttcagaaacggtttcctgatggtgtgcctttattagatcctatt
gatgatatgggcattcaagatcaagggctgaaaaaagttattcagaaagtagaagctttt
gaacatcgaatgtactctcatccacttcacaatgatccaaatttggaaactgtgtataca
ctttgtgaaaagaaagcacagattgcaatagatattaaatctgcaaagagagaactgaag
aaagcgagaactgtcctacagatggatgagctcaaatgtcgaaaacgtgttttaagaagg
ttgggatttgctacttcttctgacgtcatagagatgaaaggacgagtggcttgtgagata
agcagtgctgatgagctccttctgactgagatgatgtttaatggcctcttcaatgacctt
tctgcagaacaggcaacagccttgctaagctgttttgtgtttcaagagaattctagcgag
atgcccaaattaacggagcaattagcaggaccacttcgtcaaatgcaggaatgtgctaaa
agaattgcaaaagtttcagcagaagccaaacttgaaattgatgaagaaacgtacctaagt
tcattcaaacctcacctaatggatgtagtatatacgtgggcgactggagctacatttgcc
catatatgcaaaatgacagatgtctttgaaggtatggttacattttatatacatgtgtct
ttttctgatacaaaaaaatga
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