Tupaia chinensis (Chinese tree shrew): 102500250
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Entry
102500250 CDS
T02978
Symbol
SCN11A
Name
(RefSeq) sodium voltage-gated channel alpha subunit 11
KO
K04843
voltage-gated sodium channel type XI alpha
Organism
tup
Tupaia chinensis (Chinese tree shrew)
Brite
KEGG Orthology (KO) [BR:
tup00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
tup04040
]
102500250 (SCN11A)
Ion channels [BR:
tup04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
102500250 (SCN11A)
BRITE hierarchy
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Paralog
GFIT
Motif
Pfam:
Ion_trans
Na_trans_assoc
IQ_SCN5A_C
PKD_channel
GPHH
Motif
Other DBs
NCBI-GeneID:
102500250
NCBI-ProteinID:
XP_006161416
LinkDB
All DBs
Position
Un
AA seq
1787 aa
AA seq
DB search
MDDRCYPVIFPDARNFRPFTSDSLAAIEKRIAIQKEKKKSKDQTVSEPEPRPQLDLKASR
KLPKLYGDIPHDLIAKPLEDLDPFYRNHKTFMVLNKKRTIYRFSAKRALFILGPFNSIRS
LAIRISVHSLFSMFIICTVIINCVFMAIGLGKDSNTDTAEFIFTGIYIFEALIKILARGF
ILDEFSFLRDPWNWLDSIVIATAIVSYFPNININLLSLRTFRVFRALKAISVVSGLKVIV
GALLRSVKRLVNVMILTLFCLSIFALVGQQLFMGSLNHKCIKKECNDSDIIPDSCYEKKK
DSSESRMCGLWMGDSACSKQYMCKHSPSNPDYNYTNFDNFGWSFLAMFRLMTQDSWEKLY
QQTLRTSGLYSAFFFVVVIFLGSFYLINLTLAVVTMAYEEQNRNVAAETEAKEKMFQEAQ
QLLKEEKEALVAMGIDRSSLNSLEASSFSTKKRKLFGNTKRKSFFLRKSGKDQAPGSGSD
EESPQKTHLIEQTKRLSQNLSVDHFDEHGDPFQRQRALSAVSILTITMKEQQKSQEPCLP
CGENLASKYLVWDCSPQWICMKKALRTVMTDPFTELAITICIIINTVFLAMEHNNMEKDF
KAMLNTGNLVFTGIFIAEMCLKIIALDPYHYFRRGWNIFDSIVALLSLADVINSKSGKAD
LQFLPSFRVLRIFKLAKSWPTLNTLIKIIGHSVGALGNLTVVLAIVVFIFSVVGMQLFGS
KFGSLKNKKCQDPCFRRWHMGDFYHSFXXXXXXXXXXXFLVVFRILCGEWIENMWECMQE
ADNTPLCIIVFVLIMVVGKLVVLNLFIALLLNSFSNEERDGNPEGEARKTKVQLALNRFQ
RAFCFVVHTLRHFCRTRCNRQNLSKQKEVTGCPAAESKDIIPLVIEMKRGPDTREGLAGP
TSAPKTLGVGHDGTWLAPLAEEEDDVDFPGDNNAQPIAQPEAERQVXSFPLNTKKSTSPG
VQNVEIDVFAEDDLNLPIQNPRKKSDAASILSECSTIDPRDAFGHLPKMVPKKEPERCFP
KGLCCCFPCCGRNKKKSPWVIWWNLRKTCYQIVKHSWFESFIIFVILLSSGALIFEDVHL
SNRPQVKSLLECTDNIFTYIFILEMGLKWVAFGFGKYFTSAWCWLDFIIVIVSVTSLIDL
KSLKSFRTLRALRPLRALSQFEGMKVVVNALIGAIPAILNVLLVCLIFWLIFCILGVNFF
SGKFARCINGTDINAVINYTIVAYQNQCESNNFFWVNPEVNFDNVGKAYLALLQVATFKG
WMDIMYAAVDATEINQQPKFEANPCMYLYFVVFIIFGSFFSLNLFIGVIIDNFNQQQKKI
SGQDIFMTEEQKKYYNAMKKLGSKKPQKPIPRPLNKCQGFVFDLVTNQVFDIVIISLIIL
NMVSMMAESYKQPESMADILENLNLAFVVIFSIECLIKIFALRQYYFTNGWNLFDCVVVV
LSVVSAMVSALESQKHIPFPPTLFRIVRLARIGRILRLVRAARGIRTLLFALMMSLPSLF
NIGLLLFLVMFIYAIFGMNCFSKVENSNGIDDIFNFKTFVSSMLCLFQVTTSAGWDALLS
PMLQPKKACNTSSENCHLSSIAITYFVSYIIISFLIVVNMYIAVILENFNTATEESEDPL
GEDDFEMFYEVWEKFDPEATQFIDYAALSDFADALPEPLRVAKPNKFQFLVMDLPMVIGE
RLHCMDILFAFTTRVLGDSSGLDSMKTMMEEKFMEANPLKKLYEPIVTTTKRMEEERCAA
IIQKAFRKYMMKMANYALEDRSHSPVQVVYNEDLSSSGVAKGKVHYD
NT seq
5364 nt
NT seq
+upstream
nt +downstream
nt
atggatgacaggtgctacccagtgatcttcccagatgcacggaatttccgtccctttact
tctgactctctggctgcaatcgagaagcggattgctatccaaaaggagaaaaagaagtcc
aaagaccagacagtgtcagaacctgagcctcgacctcagcttgacctaaaggcctccaga
aagttgcccaagctctatggtgacattccccatgacctaatagcaaagcctttggaagac
ttggacccattctacaggaatcataagacgtttatggtgttgaacaaaaagagaaccatc
taccgcttcagtgccaagcgtgccttgttcattttgggacctttcaattcaatcagaagc
ttagccattaggatctcggtccattcattgttcagcatgttcatcatttgcaccgtcatc
atcaactgtgtattcatggctattgggcttggcaaagacagcaatacagatactgctgag
tttatcttcactgggatttatatttttgaagctttgataaaaatattggcaagaggtttt
attctggatgagttttctttccttcgagatccatggaactggctggactccattgtcatt
gcaactgcgattgtatcctattttccaaatatcaacataaatctgctgtccctccgtacc
ttccgagtgttcagagctttgaaagcgatttcagtagtttcaggtctgaaggtcattgtg
ggggcgttgctacgctctgtgaagaggctcgtcaacgtgatgatcctgaccctcttttgc
ctcagcatctttgccctggtagggcagcagctcttcatgggaagtctgaaccacaaatgt
atcaagaaggagtgtaatgatagtgacatcataccagactcttgctatgaaaagaagaaa
gattccagtgaatcaaggatgtgtggcctctggatgggtgacagtgcctgttctaaacaa
tatatgtgtaagcacagcccgagtaatcctgactataattacacgaattttgacaacttt
ggctggtcttttcttgccatgttccggcttatgacccaagattcctgggagaagctttac
caacagactctacgtacctctggactctactcagccttcttcttcgtggtggtcatcttc
ctgggctctttctacctgattaacttaaccctggctgtcgtcaccatggcttatgaggag
cagaacaggaatgtagctgcagagacagaggccaaggaaaagatgtttcaggaagcccag
cagctgttaaaggaggagaaagaggctctggttgccatgggaattgacagaagttcactt
aattctctggaagcatcatctttttccacaaagaaaagaaagctctttggtaatacgaaa
aggaagtccttctttttgagaaagtctgggaaagatcaggctccaggatcaggttctgat
gaagagtccccccaaaagacacatctcatagagcaaactaaacgactgtcccagaatctg
tccgtggaccattttgatgagcatggagaccctttccagaggcagagggcactgagtgct
gtcagcatcctcaccatcaccatgaaggaacaacaaaaatcgcaggagccttgtctccca
tgtggggaaaacctggcatcgaaatacctggtgtgggattgtagcccccagtggatatgc
atgaagaaggccctgagaaccgtgatgactgacccctttactgagctggccatcaccatc
tgcatcattatcaacaccgtctttttggccatggagcataacaatatggagaaggatttt
aaggctatgttgaatacagggaatttggttttcactggcatctttatagcagaaatgtgc
ctaaaaataattgcactcgatccctaccactactttcgccgaggctggaacatttttgac
agcattgttgctcttctgagtttggcagatgtgataaacagtaaatctggaaaagcagat
ctacagttcttgccttccttcagagtgctgaggatcttcaagctcgccaaatcctggcca
acgttaaacacactaattaagataattggccactctgtcggagctcttggaaacctcact
gtggtcctggctattgtggtctttattttctcagtagttggcatgcagctttttggctct
aaatttgggtcactaaagaataaaaaatgtcaggacccctgtttccggcgttggcatatg
ggggatttctaccactctttcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctttcctg
gtggtcttccgcatcctctgtggggaatggatcgagaatatgtgggaatgtatgcaagag
gccgataacacaccgttatgcatcatcgtctttgtgctgatcatggtggtaggaaaactc
gtggtgctcaatctgttcattgctttactgctcaattccttcagcaatgaggagagagat
ggaaacccagaaggagaggccaggaaaaccaaagtccagctagccctgaatcggttccaa
cgggctttttgtttcgtggtacacactctcaggcatttctgtcgtacgcgatgcaatagg
caaaacttatcaaaacaaaaagaggtgacaggatgtcctgctgcagagagcaaagacatc
attcctctggtcatagagatgaaaaggggcccagacacccgggaggggttagctgggcca
acctctgcaccaaagaccttgggtgttgggcatgacgggacttggttggccccacttgca
gaggaagaagatgatgttgactttcctggtgacaataatgcacagcccatcgcacaacct
gaggctgaaagacaggtatgaagtttcccactcaacactaagaagtccaccagcccagga
gttcaaaatgtggaaattgatgtattcgctgaggatgatcttaatctgcctatacagaac
ccccgaaagaaatctgatgcagccagtattctctcagaatgtagcaccatcgatccccga
gatgcctttggacatttacctaaaatggtccccaaaaaggaaccagagagatgttttccc
aaaggtctctgttgctgctttccatgctgtggcaggaacaaaaaaaagtccccctgggtc
atctggtggaatctgcggaaaacctgctaccaaatagtgaaacacagctggttcgagagc
tttattatcttcgtgattctgctgagcagtggagcactgatattcgaagatgttcatctt
agtaatcgaccccaagtcaaatcattgttagagtgcactgataatatttttacatatatt
tttatcctggagatgggtctgaaatgggtggcctttggatttgggaagtatttcaccagt
gcctggtgctggcttgatttcatcattgtgattgtttctgtgaccagtctcattgactta
aagagcttgaagtccttccgcactctacgagcactgaggccccttcgagcactgtctcag
tttgaaggaatgaaggtggtggtcaatgctctcataggtgccatacccgccattctgaat
gttttgcttgtctgcctcatcttctggctcatattttgcatcctgggagtgaactttttt
tccggaaaatttgcaagatgcattaatggaacagacatcaatgcagtcataaattacacc
atcgttgcataccaaaaccaatgtgaaagtaacaatttcttctgggtcaacccggaagtc
aactttgacaatgtggggaaagcttatcttgctctgctgcaagtggcaacatttaaggga
tggatggatattatgtatgcagcggtggatgccacagaaataaaccaacagccgaagttt
gaggcaaatccgtgtatgtacctttactttgtggtttttatcatcttcggctccttcttc
agtctcaatctcttcattggtgttatcattgacaacttcaatcaacagcagaaaaagata
agtggccaagacatttttatgacagaagaacagaagaaatactataacgccatgaaaaaa
ttaggatccaagaaacctcagaaacctatcccacggcctctgaacaaatgtcaaggtttc
gtgtttgacctagtcacaaaccaggtctttgacatcgtcatcataagtctcattatccta
aacatggttagcatgatggccgaatcatataagcagcctgaaagcatggcagacatcctt
gagaatctcaacctggcctttgtggtcatcttttcaatagagtgtctcatcaaaatcttt
gctttgaggcaatactacttcaccaatggctggaatttgtttgattgtgtggtcgtggtt
ctttctgttgttagtgcaatggtttctgcattggaaagccagaagcacattcctttccct
ccaacgctcttcagaattgttcgcttggcacggattggccgaatcctgagacttgttcgt
gcagcacgaggcatcaggacccttctttttgctctaatgatgtccctcccctctttattc
aacattggacttcttctctttttggttatgttcatttatgctatttttggtatgaactgc
ttttccaaagtggaaaattccaatggaatcgatgacatcttcaacttcaaaacttttgtc
agtagcatgctctgtctcttccaggtaaccacatctgcgggctgggatgctctcctcagt
cccatgctgcagccaaagaaggcatgtaacacttcctcagagaactgtcatctctcctcc
atagccataacctacttcgtcagctacatcatcatctccttcctgatcgttgtcaacatg
tacattgctgtgattttagagaacttcaatacagccactgaagaaagtgaggacccattg
ggcgaagatgactttgagatgttctacgaagtctgggaaaagtttgacccagaagcaaca
caatttattgactatgctgctctttctgactttgctgatgccctacctgagcctttgcgc
gtggcaaagccaaacaagtttcaatttctagtaatggacttgcccatggtgattggagag
cgcctccactgcatggatattcttttcgctttcaccactagagtactcggtgactccagt
ggcctggatagcatgaaaacaatgatggaggagaagttcatggaagccaatcctctcaag
aagttatatgagcccatagtcaccaccaccaagaggatggaagaggagagatgtgctgct
atcattcaaaaggcctttcgaaagtacatgatgaagatggccaactatgccttggaggac
aggtctcattcacctgtccaggtagtttataatgaagacttgtccagctctggggtagcc
aagggcaaggtccactatgactga
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integrated database retrieval system
