Turicibacter sp. H121: AT726_09440
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Entry
AT726_09440 CDS
T04254
Name
(GenBank) RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
tur
Turicibacter sp. H121
Pathway
tur03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tur00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AT726_09440
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tur03019
]
AT726_09440
03009 Ribosome biogenesis [BR:
tur03009
]
AT726_09440
Enzymes [BR:
tur01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AT726_09440
Messenger RNA biogenesis [BR:
tur03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AT726_09440
Ribosome biogenesis [BR:
tur03009
]
Prokaryotic type
rRNA helicases
AT726_09440
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
AAA_19
Motif
Other DBs
NCBI-ProteinID:
AMC09097
LinkDB
All DBs
Position
complement(1976729..1977856)
Genome browser
AA seq
375 aa
AA seq
DB search
MNFKDLGISEPLVQVLKKSGITTPTSIQEECIPLIKDYKDVIAQAQTGTGKTLAFLLPLF
ENISPDVCATQALIITPTRELALQITEEANQLAKGKAINVLAAYGGRNIGSQLNKLKGTI
HLIIATPGRLIDHIERGTIDLNKVKTVVIDEADQMLLMGFRNEVDQILRATPRNRQTLCF
SATMAPNVKKLAYHYTYSPTMVTIEPKKVTIDTIRQEVIETTDRWKADTLCQVLEEDNPF
LAIIFARTKRRADELFAKMKKRGFNVQVIHSDIAQNKRERILKSFRDADLQYLIATDVAS
RGLDISGVTHIYNYDVPETPEIYIHRIGRTGRAGEDGYTCMFVAPKDNLEFNMIERKLRR
NLPKRQLKEELRKTK
NT seq
1128 nt
NT seq
+upstream
nt +downstream
nt
atgaattttaaagatttagggattagtgaaccattggttcaagttttaaaaaaatcagga
attacaactcctacttcaattcaagaagagtgtattccattaattaaagactataaagat
gtaattgctcaggctcaaacaggaaccggaaaaacattagctttcttattaccattattt
gaaaatatttcacctgatgtctgtgcaactcaagcattaattatcacgcctactcgagag
ttagctttacaaattacagaagaagctaatcaattagctaaaggaaaagctattaatgtg
ttagcagcttacggaggacgcaatatcggttctcagctaaataaattaaaaggtactatt
catttaatcattgcaactcctggacgattaattgaccatattgaacgtggaacaatagat
ttaaataaagttaaaacagtcgtcattgatgaagcagatcaaatgttattaatgggattt
agaaatgaagttgatcaaattttaagagcaactcctcgtaatcgtcaaacactatgcttt
tctgcaacaatggcaccaaatgttaaaaaacttgcttaccactatacttactcaccaaca
atggtaacgattgaacctaagaaggtgacgattgatacgattcgtcaagaagtaattgaa
acaacggatcgttggaaggcagatacactttgccaagttcttgaagaagataatccattc
ttagccattatctttgctcgtactaagcgtcgcgccgatgaattatttgctaaaatgaaa
aaacgtggatttaacgttcaagtcattcatagtgatattgcacaaaataagcgtgaacgt
atcttaaaatccttccgtgatgcagatttacaatacttaattgcaacagatgttgcttca
cgtggacttgatattagtggtgtgactcatatttataactatgatgttccagaaacacct
gagatttatattcatcgtattgggcgtacaggtcgtgcaggtgaagatggatacacatgt
atgtttgtcgcaccaaaagataatctcgaatttaatatgattgaacgtaaactacgtcgc
aacttaccaaagcgtcaattaaaggaagaattacgcaaaacaaaataa
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